This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400580 (76 seq.)
>W1710867631
LMIL01000001
Actinomycetota
Oerskovia sp. Root22 [LMIL]
25098
25026
-
Gln
TTG
[ENA]
¡û
>W1710868645
LMJG01000001
Actinomycetota
Oerskovia sp. Root918 [LMJG]
718987
719059
+
Gln
TTG
[ENA]
¡û
>W1710878836
LMRH01000001
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
814975
815047
+
Gln
TTG
[ENA]
¡û
>W1711033864
LRIE01000062
Actinomycetota
Oerskovia enterophila [LRIE]
46466
46394
-
Gln
TTG
[ENA]
¡û
>W1711116400
LUAZ01000012
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
15979
16051
+
Gln
TTG
[ENA]
¡û
>W1711178095
LWGL01000063
Actinomycetota
Cellulosimicrobium cellulans [LWGL]
1602
1530
-
Gln
TTG
[ENA]
¡û
>W1711308518
MAQA01000004
Actinomycetota
Oerskovia enterophila [MAQA]
71387
71459
+
Gln
TTG
[ENA]
¡û
>W131242696
CAOI01000106
Actinomycetota
Cellulosimicrobium cellulans LMG 16121 [CAOI]
1570
1498
-
Gln
TTG
[ENA]
¡û
>W1711492309
MKKH01000010
Actinomycetota
Cellulosimicrobium sp. CUA-896 [MKKH]
63480
63552
+
Gln
TTG
[ENA]
¡û
>W1712001619
NEDO01000004
Actinomycetota
Cellulosimicrobium sp. KWT-B [NEDO]
411848
411776
-
Gln
TTG
[ENA]
¡û
>C171113696
CP020857
Actinomycetota
Cellulosimicrobium sp. TH-20 [CP020857]
1818388
1818460
+
Gln
TTG
-
¡û
>C171118590
CP021383
Actinomycetota
Cellulosimicrobium cellulans PSBB019 [CP021383]
770513
770441
-
Gln
TTG
-
¡û
>WENV180280299
OBHY01000003
[OBHY] human gut metagenome; Tissue from the tricuspid valve
385633
385561
-
Gln
TTG
[ENA]
¢þ
>WENV180280491
OBHZ01000009
[OBHZ] human gut metagenome; Vulva exsudate
50186
50258
+
Gln
TTG
[ENA]
¢þ
>WENV180289193
OBIR01000002
[OBIR] human gut metagenome; Skin biopsy
385608
385536
-
Gln
TTG
[ENA]
¢þ
>WENV180305047
OBJK01000004
[OBJK] human gut metagenome; Skin biopsy
385650
385578
-
Gln
TTG
[ENA]
¢þ
>WENV180305207
OBJL01000004
[OBJL] human gut metagenome; Skin biopsy
79632
79560
-
Gln
TTG
[ENA]
¢þ
>W141279548
JAGJ01000011
Actinomycetota
Cellulosimicrobium cellulans J36 [JAGJ]
22001
21929
-
Gln
TTG
[ENA]
¡û
>WENV183635050
OOIR01000020
[OOIR] human gut metagenome; Skin biopsy
52255
52183
-
Gln
TTG
[ENA]
¢þ
>WENV183635129
OOIS01000007
[OOIS] human gut metagenome; Bone, muscular tissue, and connective tissue from the spine extension of third thoracic
231076
231148
+
Gln
TTG
[ENA]
¢þ
>WENV183635199
OOIT01000159
[OOIT] human gut metagenome; Lymphatic node biopsy
875
947
+
Gln
TTG
[ENA]
¢þ
>WENV183635275
OOIU01000008
[OOIU] human gut metagenome; Lymphatic node biopsy
231076
231148
+
Gln
TTG
[ENA]
¢þ
>WENV183635419
OOIV01000007
[OOIV] human gut metagenome; Biopsy of a nasal polyp
231076
231148
+
Gln
TTG
[ENA]
¢þ
>WENV183635600
OOIW01000012
[OOIW] human gut metagenome; Skin biopsy
231076
231148
+
Gln
TTG
[ENA]
¢þ
>WENV183635845
OOJA01000010
[OOJA] human gut metagenome; Lung tissue
52255
52183
-
Gln
TTG
[ENA]
¢þ
>WENV183636125
OOJR01000007
[OOJR] human gut metagenome; Lung tissue
52255
52183
-
Gln
TTG
[ENA]
¢þ
>WENV183636350
OOKD01000063
[OOKD] human gut metagenome; Skin biopsy
52255
52183
-
Gln
TTG
[ENA]
¢þ
>WENV183636605
OOKJ01000033
[OOKJ] human gut metagenome; Material from the bottom lip
15231
15303
+
Gln
TTG
[ENA]
¢þ
>WENV183636867
OOQC01000005
[OOQC] human gut metagenome; Biopsy from a wound at the foot
52255
52183
-
Gln
TTG
[ENA]
¢þ
>WENV183637103
OPGP01000008
[OPGP] human gut metagenome; Material from the ethmoid
231076
231148
+
Gln
TTG
[ENA]
¢þ
>WENV183741478
PJUG01000023
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
247069
247141
+
Gln
TTG
[ENA]
¢þ
>WENV183742638
PJUI01000038
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
247069
247141
+
Gln
TTG
[ENA]
¢þ
>C191143995
CP035493
Actinomycetota
Xylanimonas protaetiae FW10M-9 [CP035493]
561015
560943
-
Gln
TTG
-
¡û
>W141731268
JNIY01000004
Actinomycetota
Paraoerskovia marina DSM 21750 [JNIY]
367015
367087
+
Gln
TTG
[ENA]
¡û
>W141769470
JOFV01000023
Actinomycetota
Oerskovia turbata [JOFV]
8595
8667
+
Gln
TTG
[ENA]
¡û
>W141808819
JPQW01000178
Actinomycetota
Cellulosimicrobium sp. MM [JPQW]
11324
11396
+
Gln
TTG
[ENA]
¡û
>W141808825
JPQW01000197
Actinomycetota
Cellulosimicrobium sp. MM [JPQW]
21962
21890
-
Gln
TTG
[ENA]
¡û
>W1910183753
BJNZ01000018
Actinomycetota
Cellulosimicrobium cellulans NBRC 15516 [BJNZ]
8242
8170
-
Gln
TTG
[ENA]
¡û
>W1911676385
QGTB01000001
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [QGTB]
2228344
2228272
-
Gln
TTG
[ENA]
¡û
>W1911676422
QGTB01000013
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [QGTB]
1584
1512
-
Gln
TTG
[ENA]
¡û
>W1911783482
QXTH01000018
Actinomycetota
Antribacter gilvus CFH 30434 [QXTH]
12432
12505
+
Gln
TTG
[ENA]
¡û
>W1810058168
PDJG01000001
Actinomycetota
Sanguibacter antarcticus DSM 18966 [PDJG]
162925
162997
+
Gln
TTG
[ENA]
¡û
>W1810058340
PDJJ01000001
Actinomycetota
Isoptericola jiangsuensis DSM 21863 [PDJJ]
3271277
3271205
-
Gln
TTG
[ENA]
¡û
>W1810090093
PGFE01000004
Actinomycetota
Sediminihabitans luteus DSM 25478 [PGFE]
20939
21011
+
Gln
TTG
[ENA]
¡û
>W1810102078
PGTZ01000007
Actinomycetota
Luteimicrobium subarcticum DSM 22413 [PGTZ]
612761
612833
+
Gln
TTG
[ENA]
¡û
>W1810365173
PVTW01000006
Actinomycetota
Isoptericola sp. CG 20/1183 CG 20 [PVTW]
196598
196526
-
Gln
TTG
[ENA]
¡û
>W1810365220
PVTX01000006
Actinomycetota
Isoptericola halotolerans CG 23 [PVTX]
74553
74625
+
Gln
TTG
[ENA]
¡û
>W1810477858
QAPD01000053
Actinomycetota
Sphaerisporangium cinnabarinum ATCC 31213 [QAPD]
39686
39758
+
Gln
TTG
[ENA]
¡û
>W1810702238
QMGF01000658
Actinomycetota
Cellulomonas sp. K39 [QMGF]
1574
1502
-
Gln
TTG
[ENA]
¡û
>W1810702291
QMGG01000645
Actinomycetota
Cellulomonas sp. K42B [QMGG]
1580
1508
-
Gln
TTG
[ENA]
¡û
>W1810884962
QUMZ01000001
Actinomycetota
Cellulosimicrobium cellulans ZKA48 [QUMZ]
3659527
3659455
-
Gln
TTG
[ENA]
¡û
>W10100676
ABUN01000009
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
73865
73937
+
Gln
TTG
[ENA]
¡û
>C10111736
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
3357972
3357900
-
Gln
TTG
[Ensembl]
¡û
>C10114241
CP001821
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [CP001821]
3004056
3003982
-
Gln
TTG
[Ensembl]
¡û
>W11100676
ABUN01000009
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
73865
73937
+
Gln
TTG
[ENA]
¡û
>W1510548154
CSVS01000212
Actinomycetota
Mycobacteroides abscessus PAP066 [CSVS]
1741
1669
-
Gln
TTG
[ENA]
¡û
>C11111579
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
2741112
2741040
-
Gln
TTG
[Ensembl]
¡û
>W1511219771
JNBQ01000042
Actinomycetota
Cellulosimicrobium funkei U11 [JNBQ]
9469
9397
-
Gln
TTG
[ENA]
¡û
>C161068390
CP014209
Actinomycetota
Isoptericola dokdonensis DS-3 [CP014209]
3447764
3447836
+
Gln
TTG
[Ensembl]
¡û
>W121126195
BAGU01000117
Actinomycetota
Promicromonosporaceae bacterium W15 [BAGU]
1685
1611
-
Gln
TTG
[ENA]
¡û
>W1610021798
ATNL01000007
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
446389
446317
-
Gln
TTG
[ENA]
¡û
>W1610069030
BCRT01000021
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
241008
240936
-
Gln
TTG
[ENA]
¡û
>W1610069367
BCSK01000044
Actinomycetota
Cellulosimicrobium funkei NBRC 104118 [BCSK]
52119
52047
-
Gln
TTG
[ENA]
¡û
>W1610729977
LMIL01000001
Actinomycetota
Oerskovia sp. Root22 [LMIL]
25098
25026
-
Gln
TTG
[ENA]
¡û
>W1610730991
LMJG01000001
Actinomycetota
Oerskovia sp. Root918 [LMJG]
718987
719059
+
Gln
TTG
[ENA]
¡û
>W1610741182
LMRH01000001
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
814975
815047
+
Gln
TTG
[ENA]
¡û
>W1610881639
LRIE01000062
Actinomycetota
Oerskovia enterophila [LRIE]
46466
46394
-
Gln
TTG
[ENA]
¡û
>W1610927642
LUAZ01000012
Actinomycetota
Cellulosimicrobium sp. I38E [LUAZ]
15979
16051
+
Gln
TTG
[ENA]
¡û
>W1611056177
MAQA01000004
Actinomycetota
Oerskovia enterophila [MAQA]
71387
71459
+
Gln
TTG
[ENA]
¡û
>W1710018493
ATNL01000007
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
446389
446317
-
Gln
TTG
[ENA]
¡û
>W1710066403
BCRT01000021
Actinomycetota
Sanguibacter suarezii NBRC 16159 [BCRT]
241008
240936
-
Gln
TTG
[ENA]
¡û
>W1710066740
BCSK01000044
Actinomycetota
Cellulosimicrobium funkei NBRC 104118 [BCSK]
52119
52047
-
Gln
TTG
[ENA]
¡û
>W1710510887
FMYH01000004
Actinomycetota
Sanguibacter gelidistatuariae ISLP-3 [FMYH]
189311
189383
+
Gln
TTG
[ENA]
¡û
>W1710515499
FNBV01000004
Actinomycetota
Cellulosimicrobium cellulans [FNBV]
408360
408288
-
Gln
TTG
[ENA]
¡û
>W1710596057
FTMI01000007
Actinomycetota
Cellulosimicrobium aquatile [FTMI]
188465
188537
+
Gln
TTG
[ENA]
¡û
>W1710607363
FXAA01000008
Actinomycetota
Cellulosimicrobium cellulans J1 [FXAA]
213689
213761
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK