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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400618 (107 seq.)
>PL171000345
CP001933
Euryarchaeota
Natrialba magadii ATCC 43099 plasmid:pNMAG01
372914
372841
-
Ala
TGC
[ENA]
¡û
>A171000017
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1865199
1865274
+
Ala
TGC
-
¡û
>A171001285
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
28475
28548
+
Ala
TGC
-
¡û
>A171001318
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
1684311
1684238
-
Ala
TGC
-
¡û
>A171001603
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
13574
13503
-
Ala
TGC
-
¡û
>A171002452
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1301641
1301714
+
Ala
TGC
-
¡û
>A171002456
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
2728993
2729066
+
Ala
TGC
-
¡û
>A171002480
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
426103
426030
-
Ala
TGC
-
¡û
>A171002693
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
199881
199954
+
Ala
TGC
-
¡û
>A171002724
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
1767424
1767351
-
Ala
TGC
-
¡û
>A171003096
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1819572
1819645
+
Ala
TGC
-
¡û
>A171003107
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
3747500
3747427
-
Ala
TGC
-
¡û
>A171003116
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
1332814
1332741
-
Ala
TGC
-
¡û
>A171003474
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1286615
1286688
+
Ala
TGC
-
¡û
>A171003477
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1700739
1700812
+
Ala
TGC
-
¡û
>A171003485
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
3770406
3770333
-
Ala
TGC
-
¡û
>A171003491
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2436496
2436423
-
Ala
TGC
-
¡û
>A171003753
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
1165646
1165573
-
Ala
TGC
-
¡û
>A171004163
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
192947
193022
+
Ala
TGC
-
¡û
>A171006911
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
1272655
1272728
+
Ala
TGC
-
¡û
>A171006918
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2475944
2476017
+
Ala
TGC
-
¡û
>A171006933
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3028288
3028215
-
Ala
TGC
-
¡û
>A171006989
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
108835
108908
+
Ala
TGC
-
¡û
>A171007003
CP019893
Euryarchaeota
Natrarchaeobaculum aegyptiacum JW/NM-HA 15 [CP019893]
1872737
1872810
+
Ala
TGC
-
¡û
>A171007138
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
68631
68702
+
Ala
TGC
-
¡û
>A171007169
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
1835010
1834939
-
Ala
TGC
-
¡û
>A171007264
HF582854
Euryarchaeota
Natronomonas moolapensis 8.8.11 [HF582854]
27749
27820
+
Ala
TGC
-
¡û
>A171007428
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
35799
35874
+
Ala
TGC
-
¡û
>WENV180315520
OBKH01117984
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
222
151
-
Ala
TGC
[ENA]
¢þ
>WENV180318840
OBKM01017440
[OBKM] metagenome; water
771
700
-
Ala
TGC
[ENA]
¢þ
>WENV180318857
OBKM01019984
[OBKM] metagenome; water
66
140
+
Ala
TGC
[ENA]
¢þ
>WENV170008687
APHM01001479
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
850
921
+
Ala
TGC
[ENA]
¢þ
>WENV170008817
APHM01008082
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
650
722
+
Ala
TGC
[ENA]
¢þ
>WENV170009134
APHM01021431
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1214
1143
-
Ala
TGC
[ENA]
¢þ
>WENV170009164
APHM01021485
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1950
1878
-
Ala
TGC
[ENA]
¢þ
>WENV170009185
APHM01021508
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1085
1157
+
Ala
TGC
[ENA]
¢þ
>WENV170009229
APHM01021793
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
478
549
+
Ala
TGC
[ENA]
¢þ
>At0813
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1877083
1877154
+
Ala
TGC
[Ensembl]
¡û
>At0841
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
69279
69350
+
Ala
TGC
[Ensembl]
¡û
>At0874
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
1772528
1772457
-
Ala
TGC
[Ensembl]
¡û
>At1710
CR936257
Euryarchaeota
Natronomonas pharaonis DSM 2160 Gabara [CR936257]
214367
214296
-
Ala
TGC
[Ensembl]
¡û
>WENV170660295
JXWT01058188
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
146
217
+
Ala
TGC
[ENA]
¢þ
>W1910006932
BBMP01000022
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
276569
276498
-
Ala
TGC
[ENA]
¡û
>W1910230031
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
1626856
1626781
-
Ala
TGC
[ENA]
¡û
>W1910230464
FORO01000070
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
3469
3396
-
Ala
TGC
[ENA]
¡û
>W1910826084
MWPH01000001
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
1302464
1302537
+
Ala
TGC
[ENA]
¡û
>W1911591355
PKKI01000104
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
1801
1874
+
Ala
TGC
[ENA]
¡û
>W1911693750
QLVG01000041
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
36593
36522
-
Ala
TGC
[ENA]
¡û
>W1911709899
QPMJ01000007
Euryarchaeota
Halorussus rarus TBN4 [QPMJ]
1678
1751
+
Ala
TGC
[ENA]
¡û
>W1911709987
QPND01000009
Euryarchaeota
Saliphagus sp. LR7 [QPND]
37682
37609
-
Ala
TGC
[ENA]
¡û
>W1911824365
QZWE01000032
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
19297
19226
-
Ala
TGC
[ENA]
¡û
>SRA1013799
SRR023631.30155
High saltern (Pond 5) microbes attempt 1 (SRP001107)
80
9
-
Ala
TGC
[SRA]
>W1610000840
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
2398916
2398987
+
Ala
TGC
[ENA]
¡û
>W1610001045
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
32035
32108
+
Ala
TGC
[ENA]
¡û
>W1610004113
AGIM01000014
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
67307
67234
-
Ala
TGC
[ENA]
¡û
>W1610004190
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
318693
318618
-
Ala
TGC
[ENA]
¡û
>W1610005331
AJRK01000365
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
1953
2024
+
Ala
TGC
[ENA]
¡û
>W1610011702
AOHS01000001
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
136
209
+
Ala
TGC
[ENA]
¡û
>W1610011712
AOHS01000020
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
131
204
+
Ala
TGC
[ENA]
¡û
>W1610011882
AOHV01000046
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
33233
33304
+
Ala
TGC
[ENA]
¡û
>W1610012060
AOHZ01000097
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
571
498
-
Ala
TGC
[ENA]
¡û
>W1610012070
AOIA01000028
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
802
729
-
Ala
TGC
[ENA]
¡û
>W1610012071
AOIA01000028
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
713
640
-
Ala
TGC
[ENA]
¡û
>W1610012106
AOIA01000170
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
24
97
+
Ala
TGC
[ENA]
¡û
>W1610012162
AOIC01000047
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
16843
16770
-
Ala
TGC
[ENA]
¡û
>W1610012450
AOIL01000067
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
827
756
-
Ala
TGC
[ENA]
¡û
>W1610012472
AOIM01000020
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
345
272
-
Ala
TGC
[ENA]
¡û
>W1610012473
AOIM01000020
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
88
15
-
Ala
TGC
[ENA]
¡û
>W1610012504
AOIN01000025
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
3102
3029
-
Ala
TGC
[ENA]
¡û
>W1610012528
AOIN01000072
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
190
117
-
Ala
TGC
[ENA]
¡û
>W1610012578
AOIO01000040
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
404641
404714
+
Ala
TGC
[ENA]
¡û
>W1610012579
AOIP01000001
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
172
245
+
Ala
TGC
[ENA]
¡û
>W1610012582
AOIP01000004
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
82
9
-
Ala
TGC
[ENA]
¡û
>W1610012641
AOIQ01000016
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
16914
16987
+
Ala
TGC
[ENA]
¡û
>W1610012768
AOIT01000020
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
619
692
+
Ala
TGC
[ENA]
¡û
>W1610014405
AOLZ01000005
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
41
114
+
Ala
TGC
[ENA]
¡û
>W1610014436
AOLZ01000059
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
45
118
+
Ala
TGC
[ENA]
¡û
>W1610014495
AOMB01000011
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
44934
45005
+
Ala
TGC
[ENA]
¡û
>W1610014538
AOMC01000054
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
62967
63038
+
Ala
TGC
[ENA]
¡û
>W1610014596
AOMD01000030
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
118735
118806
+
Ala
TGC
[ENA]
¡û
>W1610014638
AOME01000075
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
29632
29703
+
Ala
TGC
[ENA]
¡û
>W1610014653
AOMF01000040
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
273
202
-
Ala
TGC
[ENA]
¡û
>W1610019076
ARPX01000147
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
67741
67812
+
Ala
TGC
[ENA]
¡û
>W1610019096
ARPX01000186
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
1284
1213
-
Ala
TGC
[ENA]
¡û
>W1610019173
ARPZ01000094
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
2532
2603
+
Ala
TGC
[ENA]
¡û
>W1610029958
AXZD01000013
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
14090
14019
-
Ala
TGC
[ENA]
¡û
>W1610040548
BAFM01000010
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
107095
107166
+
Ala
TGC
[ENA]
¡û
>W1610041357
BANO01000323
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 [BANO]
1844
1917
+
Ala
TGC
[ENA]
¡û
>W1610041554
BATA01000133
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
1856
1929
+
Ala
TGC
[ENA]
¡û
>W1610061870
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
2566738
2566813
+
Ala
TGC
[ENA]
¡û
>W1610083002
CBMA010000055
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
1901
1974
+
Ala
TGC
[ENA]
¡û
>W1610083044
CBMB010000011
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
3134
3061
-
Ala
TGC
[ENA]
¡û
>W1610085068
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
1299560
1299635
+
Ala
TGC
[ENA]
¡û
>W1610085133
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
160080
160005
-
Ala
TGC
[ENA]
¡û
>W1610085172
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
202281
202206
-
Ala
TGC
[ENA]
¡û
>W1610085211
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
201896
201821
-
Ala
TGC
[ENA]
¡û
>W1610085234
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
2356884
2356959
+
Ala
TGC
[ENA]
¡û
>W1610085267
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
1299644
1299719
+
Ala
TGC
[ENA]
¡û
>W1610085316
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
2313488
2313563
+
Ala
TGC
[ENA]
¡û
>W1610671378
LKCV01000129
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
3287
3214
-
Ala
TGC
[ENA]
¡û
>W1610671385
LKCV01000147
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
1722
1795
+
Ala
TGC
[ENA]
¡û
>W1610675772
LKIR01000028
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
973
900
-
Ala
TGC
[ENA]
¡û
>W1610925033
LTAZ01000003
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
275804
275875
+
Ala
TGC
[ENA]
¡û
>ENV000329
AF291168
Environmental sample from ENV division of INSDC
281
355
+
Ala
TGC
[ENA]
>ENV000330
AF291169
Environmental sample from ENV division of INSDC
280
354
+
Ala
TGC
[ENA]
>ENV004067
DQ314493
Environmental sample from ENV division of INSDC
27363
27437
+
Ala
TGC
[ENA]
>ENV004071
DQ314494
Environmental sample from ENV division of INSDC
33905
33831
-
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK