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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400663 (73 seq.)
>W131046723
AMSP01000007
Actinomycetota
Brevibacterium casei S18 [AMSP]
41920
41992
+
Gln
CTG
[ENA]
¡û
>W131054705
ANAY01000021
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
5512
5438
-
Gln
CTG
[ENA]
¡û
>W131055062
ANBE01000059
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
11256
11330
+
Gln
CTG
[ENA]
¡û
>W131055095
ANBF01000153
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
18700
18628
-
Gln
CTG
[ENA]
¡û
>W1711009400
LQQR01000006
Actinomycetota
Brevibacterium casei [LQQR]
128481
128409
-
Gln
CTG
[ENA]
¡û
>W1711492092
MKKC01000098
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
171818
171746
-
Gln
CTG
[ENA]
¡û
>W1711739007
MUBN01000099
Actinomycetota
Streptomyces antimycoticus castelarensis [MUBN]
26934
27008
+
Gln
CTG
[ENA]
¡û
>C171070715
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
1006310
1006382
+
Gln
CTG
-
¡û
>WENV180023351
FTHV01001067
[FTHV] metagenome; soil
356
284
-
Gln
CTG
[ENA]
¢þ
>WENV180028837
FTJH01091525
[FTJH] metagenome; soil
73
1
-
Gln
CTG
[ENA]
¢þ
>WENV180033609
FTKL01000419
[FTKL] metagenome; soil
31010
30938
-
Gln
CTG
[ENA]
¢þ
>WENV180033613
FTKL01000419
[FTKL] metagenome; soil
30530
30456
-
Gln
CTG
[ENA]
¢þ
>W141042854
AMEW01000023
Actinomycetota
Actinomyces sp. oral taxon 181 oral taxon 181 str. F0379 [AMEW]
6112
6186
+
Gln
CTG
[ENA]
¡û
>WENV180783590
ODIQ01012026
[ODIQ] human metagenome; G_DNA_Tongue dorsum
154
80
-
Gln
CTG
[ENA]
¢þ
>WENV180820289
ODJR01003753
[ODJR] human metagenome; G_DNA_Tongue dorsum
496
570
+
Gln
CTG
[ENA]
¢þ
>WENV180897407
ODNI01021079
[ODNI] human metagenome; G_DNA_Tongue dorsum
1047
1121
+
Gln
CTG
[ENA]
¢þ
>WENV180902710
ODOK01145675
[ODOK] human metagenome; G_DNA_Tongue dorsum
153
79
-
Gln
CTG
[ENA]
¢þ
>WENV180946119
ODUD01007881
[ODUD] human metagenome; G_DNA_Tongue dorsum
879
805
-
Gln
CTG
[ENA]
¢þ
>WENV181074978
OEAO01047821
[OEAO] human metagenome; G_DNA_Tongue dorsum
513
587
+
Gln
CTG
[ENA]
¢þ
>WENV181113283
OEEL01018033
[OEEL] human metagenome; G_DNA_Tongue dorsum
1314
1388
+
Gln
CTG
[ENA]
¢þ
>WENV181134826
OEGG01000255
[OEGG] human metagenome; G_DNA_Tongue dorsum
18509
18435
-
Gln
CTG
[ENA]
¢þ
>WENV181175630
OEJQ01011335
[OEJQ] human metagenome; G_DNA_Tongue dorsum
135
61
-
Gln
CTG
[ENA]
¢þ
>W141140059
AWOO02000025
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
81794
81722
-
Gln
CTG
[ENA]
¡û
>WENV182413097
OIFX01000063
[OIFX] human gut metagenome; stool
84907
84835
-
Gln
CTG
[ENA]
¢þ
>WENV182842623
OKIF01000170
[OKIF] human gut metagenome; human gut
173
101
-
Gln
CTG
[ENA]
¢þ
>WENV183790451
PPYF01411394
[PPYF] human gut metagenome; stool from patient with Crohn's disease
12721
12795
+
Gln
CTG
[ENA]
¢þ
>C181171286
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
1837662
1837734
+
Gln
CTG
-
¡û
>C181171513
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
2258410
2258482
+
Gln
CTG
-
¡û
>C191114770
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
87775
87703
-
Gln
CTG
-
¡û
>C191114855
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
574417
574345
-
Gln
CTG
-
¡û
>C191125304
CP034438
Actinomycetota
Flaviflexus salsibiostraticola KCTC 33148 [CP034438]
885924
885852
-
Gln
CTG
-
¡û
>W141756140
JNWZ01000019
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
8477
8551
+
Gln
CTG
[ENA]
¡û
>W141757842
JNYE01000026
Actinomycetota
Kitasatospora phosalacinea [JNYE]
61201
61127
-
Gln
CTG
[ENA]
¡û
>W141767541
JOER01000035
Actinomycetota
Kitasatospora aureofaciens [JOER]
62777
62703
-
Gln
CTG
[ENA]
¡û
>W141768670
JOFJ01000003
Actinomycetota
Spirillospora albida [JOFJ]
183511
183439
-
Gln
CTG
[ENA]
¡û
>W1910237208
FPKP01000001
Actinomycetota
Actinomyces urinae FC2 Marseille-P2225 [FPKP]
28790
28862
+
Gln
CTG
[ENA]
¡û
>W1910331195
FSLI01000011
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
220161
220089
-
Gln
CTG
[ENA]
¡û
>W1910340143
FTLP01000013
Actinomycetota
Actinomyces marseillensis Marseille-P2818 [FTLP]
263474
263548
+
Gln
CTG
[ENA]
¡û
>W1910500250
FXZC01000008
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
84369
84441
+
Gln
CTG
[ENA]
¡û
>W1910547218
FZNP01000006
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
416246
416174
-
Gln
CTG
[ENA]
¡û
>W1910548641
FZOR01000003
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
220664
220592
-
Gln
CTG
[ENA]
¡û
>W1910871226
NCWY01000006
Actinomycetota
Brevibacterium casei OG2 [NCWY]
84384
84312
-
Gln
CTG
[ENA]
¡û
>W1911243778
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
2679906
2679832
-
Gln
CTG
[ENA]
¡û
>W1911696923
QNGF01000003
Actinomycetota
Brevibacterium casei S51 [QNGF]
102424
102496
+
Gln
CTG
[ENA]
¡û
>W1810570498
QEIN01000005
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
37473
37401
-
Gln
CTG
[ENA]
¡û
>W1810721376
QNRZ01000001
Actinomycetota
Brevibacterium sanguinis 2b_TX [QNRZ]
198791
198719
-
Gln
CTG
[ENA]
¡û
>W1810721467
QNSB01000001
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
378233
378305
+
Gln
CTG
[ENA]
¡û
>W1810913815
QVNQ01000003
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
819894
819822
-
Gln
CTG
[ENA]
¡û
>W10100206
ABFV01000013
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
114675
114749
+
Gln
CTG
[ENA]
¡û
>W1510014181
BBPO01000073
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
29399
29327
-
Gln
CTG
[ENA]
¡û
>W10127855
AEET01000024
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
60577
60649
+
Gln
CTG
[ENA]
¡û
>W1510456314
CPWZ01000013
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
1507
1579
+
Gln
CTG
[ENA]
¡û
>W11100206
ABFV01000013
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
114675
114749
+
Gln
CTG
[ENA]
¡û
>C11111581
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
2307127
2307055
-
Gln
CTG
[Ensembl]
¡û
>W11135343
AEET01000024
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
60577
60649
+
Gln
CTG
[ENA]
¡û
>W1511529100
JYJF01000163
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
149
223
+
Gln
CTG
[ENA]
¡û
>W1511529103
JYJF01000178
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
7434
7506
+
Gln
CTG
[ENA]
¡û
>W1511545271
JZKH01000082
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
30373
30299
-
Gln
CTG
[ENA]
¡û
>W1610050900
BBGH01000564
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
459
531
+
Gln
CTG
[ENA]
¡û
>W1610067439
BCQP01000001
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
64079
64151
+
Gln
CTG
[ENA]
¡û
>W1610067508
BCQQ01000011
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
38979
38907
-
Gln
CTG
[ENA]
¡û
>W1610067644
BCQS01000005
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
864663
864591
-
Gln
CTG
[ENA]
¡û
>W1610067712
BCQT01000014
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
68688
68760
+
Gln
CTG
[ENA]
¡û
>W1610857920
LQQR01000006
Actinomycetota
Brevibacterium casei [LQQR]
128481
128409
-
Gln
CTG
[ENA]
¡û
>W1710018519
ATNL01000013
Actinomycetota
Cellulosimicrobium cellulans F16 [ATNL]
86806
86880
+
Gln
CTG
[ENA]
¡û
>W1710047299
BBGH01000564
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
459
531
+
Gln
CTG
[ENA]
¡û
>W1710055760
BCAN01000147
Actinomycetota
Streptomyces hygroscopicus sporocinereus [BCAN]
5610
5684
+
Gln
CTG
[ENA]
¡û
>W1710064812
BCQP01000001
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
64079
64151
+
Gln
CTG
[ENA]
¡û
>W1710064881
BCQQ01000011
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
38979
38907
-
Gln
CTG
[ENA]
¡û
>W1710065017
BCQS01000005
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
864663
864591
-
Gln
CTG
[ENA]
¡û
>W1710065085
BCQT01000014
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
68688
68760
+
Gln
CTG
[ENA]
¡û
>W1710544714
FOAZ01000025
Actinomycetota
Streptacidiphilus jiangxiensis [FOAZ]
34805
34877
+
Gln
CTG
[ENA]
¡û
>W1710570627
FOVH01000001
Actinomycetota
Actinomadura madurae [FOVH]
72587
72659
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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