This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400694 (48 seq.)
>W131242027
BASI01000005
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [BASI]
680891
680965
+
Gln
TTG
[ENA]
¡û
>W1711642831
MPZQ01000002
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
336670
336744
+
Gln
TTG
[ENA]
¡û
>W1711642879
MPZR01000002
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
454307
454233
-
Gln
TTG
[ENA]
¡û
>W1711642950
MPZS01000003
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
337908
337834
-
Gln
TTG
[ENA]
¡û
>W1711642962
MPZT01000002
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
65990
66064
+
Gln
TTG
[ENA]
¡û
>W1711643026
MPZU01000004
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
195490
195564
+
Gln
TTG
[ENA]
¡û
>W1711643058
MPZV01000002
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
159821
159895
+
Gln
TTG
[ENA]
¡û
>W1711643120
MPZW01000007
Alphaproteobacteria
Thioclava sp. L04-15 [MPZW]
974
900
-
Gln
TTG
[ENA]
¡û
>W1711643151
MPZX01000002
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
553963
554037
+
Gln
TTG
[ENA]
¡û
>W1711709198
MSYP01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYP]
3175831
3175905
+
Gln
TTG
[ENA]
¡û
>W1711709233
MSYQ01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYQ]
3538236
3538310
+
Gln
TTG
[ENA]
¡û
>W1711709299
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
298134
298060
-
Gln
TTG
[ENA]
¡û
>W1711947201
NBNX01000003
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
27360
27434
+
Gln
TTG
[ENA]
¡û
>W1711947251
NBNY01000002
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
599600
599526
-
Gln
TTG
[ENA]
¡û
>W1711947290
NBNZ01000002
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
552576
552502
-
Gln
TTG
[ENA]
¡û
>W1711947329
NBOA01000002
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
556489
556415
-
Gln
TTG
[ENA]
¡û
>W1711947384
NBOB01000003
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
465
391
-
Gln
TTG
[ENA]
¡û
>W1711959012
NBXF01000012
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
10940
10866
-
Gln
TTG
[ENA]
¡û
>C171032474
CP014596
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
307451
307377
-
Gln
TTG
-
¡û
>C171067773
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2463725
2463799
+
Gln
TTG
-
¡û
>C171094353
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
3197942
3198016
+
Gln
TTG
-
¡û
>C171105937
CP020384
Alphaproteobacteria
Rhodovulum sp. MB263 [CP020384]
787457
787383
-
Gln
TTG
-
¡û
>W141065876
AQRC01000015
Alphaproteobacteria
Thioclava atlantica 13D2W-2 [AQRC]
117770
117844
+
Gln
TTG
[ENA]
¡û
>W141082594
AUND01000021
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
1619
1693
+
Gln
TTG
[ENA]
¡û
>WENV170484419
CEVN01020547
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
526
600
+
Gln
TTG
[ENA]
¢þ
>WENV170811848
MDSW01173814
[MDSW] marine metagenome; seawater
10779
10705
-
Gln
TTG
[ENA]
¢þ
>C181060524
CP022189
Alphaproteobacteria
Alloyangia pacifica YSBP01 [CP022189, CP022190]
926789
926863
+
Gln
TTG
-
¡û
>W1910808400
MUAV01000016
Alphaproteobacteria
Rhodovulum viride JA756 [MUAV]
102892
102966
+
Gln
TTG
[ENA]
¡û
>W1911281161
NTHN01000201
Alphaproteobacteria
Alloyangia mangrovi SAOS 153D [NTHN]
3291
3365
+
Gln
TTG
[ENA]
¡û
>W1911283642
NTJD01000007
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
141988
141914
-
Gln
TTG
[ENA]
¡û
>W1911495015
OBMN01000002
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
114635
114709
+
Gln
TTG
[ENA]
¡û
>W1911538672
OMOQ01000003
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
302963
302889
-
Gln
TTG
[ENA]
¡û
>W1911575816
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
3030043
3030117
+
Gln
TTG
[ENA]
¡û
>W1810351386
PVEP01000014
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
58787
58861
+
Gln
TTG
[ENA]
¡û
>W1810486772
QAYC01000014
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
689
615
-
Gln
TTG
[ENA]
¡û
>W1810584509
QFBB01000001
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
54582
54656
+
Gln
TTG
[ENA]
¡û
>W1810722988
QNVX01000048
Alphaproteobacteria
Rhodovulum sp. BSW8 [QNVX]
32726
32800
+
Gln
TTG
[ENA]
¡û
>C161001482
AP014800
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 2351 [AP014800]
980230
980156
-
Gln
TTG
[Ensembl]
¡û
>C161087735
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
3759259
3759333
+
Gln
TTG
-
¡û
>C161087784
CP015421
Alphaproteobacteria
Rhodovulum sulfidophilum SNK001 [CP015421]
3723757
3723831
+
Gln
TTG
[Ensembl]
¡û
>W1610081480
BDDO01000005
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
161145
161071
-
Gln
TTG
[ENA]
¡û
>W1710080131
BDDO01000005
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
161145
161071
-
Gln
TTG
[ENA]
¡û
>W1710516257
FNCL01000015
Alphaproteobacteria
Alloyangia pacifica [FNCL]
47508
47434
-
Gln
TTG
[ENA]
¡û
>W1710540953
FNXG01000002
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
63933
63859
-
Gln
TTG
[ENA]
¡û
>W1710547679
FODE01000006
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
32361
32435
+
Gln
TTG
[ENA]
¡û
>W1710576248
FOZW01000014
Alphaproteobacteria
Alloyangia pacifica [FOZW]
47911
47837
-
Gln
TTG
[ENA]
¡û
>W1710592354
FRCK01000001
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
223343
223417
+
Gln
TTG
[ENA]
¡û
>W1710599134
FTOM01000002
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
698631
698557
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK