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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400748 (34 seq.)
>W1711005275
LQNM01000001
Bacillota
Pediococcus pentosaceus [LQNM]
218467
218396
-
Arg
CCG
[ENA]
¡û
>W1711068949
LSFE01000008
Bacillota
Pediococcus pentosaceus [LSFE]
92351
92422
+
Arg
CCG
[ENA]
¡û
>C171034298
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
1393002
1392929
-
Arg
CCG
-
¡û
>C171034355
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
1390796
1390723
-
Arg
CCG
-
¡û
>C171119468
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1278749
1278820
+
Arg
CCG
-
¡û
>C171126486
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1267134
1267205
+
Arg
CCG
-
¡û
>C017456
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
509537
509466
-
Arg
CCG
[Ensembl]
¡û
>WENV180279015
OBHX01013221
[OBHX] metagenome; feces
3167
3238
+
Arg
CCG
[ENA]
¢þ
>WENV180333892
OBLF01002792
[OBLF] metagenome; feces
5412
5341
-
Arg
CCG
[ENA]
¢þ
>WENV180349698
OBLO01092697
[OBLO] metagenome; feces
364
293
-
Arg
CCG
[ENA]
¢þ
>W141241992
CAHU01000011
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
55099
55170
+
Arg
CCG
[ENA]
¡û
>WENV183769038
PPYE01412566
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1257
1328
+
Arg
CCG
[ENA]
¢þ
>WENV183790275
PPYF01411160
[PPYF] human gut metagenome; stool from patient with Crohn's disease
231824
231753
-
Arg
CCG
[ENA]
¢þ
>W141402930
JDVW01000004
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
344899
344828
-
Arg
CCG
[ENA]
¡û
>WENV170659225
JXWR01001753
[JXWR] soil metagenome; rice field; ambient CO2
27175
27104
-
Arg
CCG
[ENA]
¢þ
>C181042788
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
1535640
1535569
-
Arg
CCG
-
¡û
>C191023267
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
522776
522705
-
Arg
CCG
-
¡û
>W09101501
AAEV01000042
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
206
135
-
Arg
CCG
[ENA]
¡û
>C141009525
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
563097
563026
-
Arg
CCG
[Ensembl]
¡û
>W1911631297
PUFB01000019
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
70553
70624
+
Arg
CCG
[ENA]
¡û
>W1810000844
BEWQ01000006
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
222898
222827
-
Arg
CCG
[ENA]
¡û
>C121006647
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
551767
551694
-
Arg
CCG
[Ensembl]
¡û
>C161092335
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1498914
1498985
+
Arg
CCG
[Ensembl]
¡û
>W1610057763
BBZC01000009
Bacillota
Pediococcus pentosaceus [BBZC]
56353
56282
-
Arg
CCG
[ENA]
¡û
>W1610528238
JQBB01000001
Bacillota
Pediococcus claussenii [JQBB]
265268
265195
-
Arg
CCG
[ENA]
¡û
>W1610528416
JQBF01000004
Bacillota
Pediococcus pentosaceus [JQBF]
62330
62401
+
Arg
CCG
[ENA]
¡û
>W1610529220
JQBX01000005
Bacillota
Pediococcus stilesii [JQBX]
10889
10960
+
Arg
CCG
[ENA]
¡û
>W1610650066
LJIU01000002
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
224153
224082
-
Arg
CCG
[ENA]
¡û
>W1610855925
LQNM01000001
Bacillota
Pediococcus pentosaceus [LQNM]
218467
218396
-
Arg
CCG
[ENA]
¡û
>W1610909519
LSFE01000008
Bacillota
Pediococcus pentosaceus [LSFE]
92351
92422
+
Arg
CCG
[ENA]
¡û
>W1710054462
BBZC01000009
Bacillota
Pediococcus pentosaceus [BBZC]
56353
56282
-
Arg
CCG
[ENA]
¡û
>W1710629828
JQBB01000001
Bacillota
Pediococcus claussenii [JQBB]
265268
265195
-
Arg
CCG
[ENA]
¡û
>W1710630006
JQBF01000004
Bacillota
Pediococcus pentosaceus [JQBF]
62330
62401
+
Arg
CCG
[ENA]
¡û
>W1710630810
JQBX01000005
Bacillota
Pediococcus stilesii [JQBX]
10889
10960
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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