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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400771 (10 seq.)
>A171001863
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
207943
208017
+
Cys
GCA
-
¡û
>A171003905
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
467823
467749
-
Cys
GCA
-
¡û
>A171004034
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
316952
317026
+
Cys
GCA
-
¡û
>A171006463
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
241094
241168
+
Cys
GCA
-
¡û
>A171006667
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1317277
1317203
-
Cys
GCA
-
¡û
>WENV180287600
OBIK01148747
[OBIK] hydrothermal vent metagenome; sea water
67
141
+
Cys
GCA
[ENA]
¢þ
>WENV170676722
LDZS01002036
[LDZS] terrestrial metagenome; oil reservoir sample K3
22938
23012
+
Cys
GCA
[ENA]
¢þ
>W1910200326
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
14651
14577
-
Cys
GCA
[ENA]
¡û
>W1610000715
ABSF01000008
Euryarchaeota
Thermococcus barophilus MP [ABSF]
24379
24305
-
Cys
GCA
[ENA]
¡û
>W1610004927
AHVB01000044
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
9040
8966
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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