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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400774 (113 seq.)
>A171004348
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1891060
1891131
+
Gly
GCC
-
¡û
>A171004627
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2163109
2163182
+
Gly
GCC
-
¡û
>A171004692
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1888803
1888730
-
Gly
GCC
-
¡û
>A171004966
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
1300527
1300456
-
Gly
GCC
-
¡û
>A171005018
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
1238777
1238706
-
Gly
GCC
-
¡û
>A171005070
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
1295037
1294966
-
Gly
GCC
-
¡û
>A171005121
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1312188
1312117
-
Gly
GCC
-
¡û
>A171005167
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2994934
2994863
-
Gly
GCC
-
¡û
>A171005276
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1668952
1668881
-
Gly
GCC
-
¡û
>A171005279
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1668570
1668499
-
Gly
GCC
-
¡û
>A171005312
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3217671
3217742
+
Gly
GCC
-
¡û
>A171005346
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
106204
106133
-
Gly
GCC
-
¡û
>A171005436
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1386852
1386781
-
Gly
GCC
-
¡û
>A171005493
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1358432
1358361
-
Gly
GCC
-
¡û
>A171005520
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
3400679
3400750
+
Gly
GCC
-
¡û
>A171005544
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1474578
1474507
-
Gly
GCC
-
¡û
>A171005547
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1474195
1474124
-
Gly
GCC
-
¡û
>A171005574
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3161099
3161170
+
Gly
GCC
-
¡û
>A171005623
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3101478
3101549
+
Gly
GCC
-
¡û
>A171006807
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1959096
1959025
-
Gly
GCC
-
¡û
>A173000199
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
119868
119939
+
Gly
GCC
-
¡û
>A173000200
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
120251
120322
+
Gly
GCC
-
¡û
>A173000235
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3018395
3018324
-
Gly
GCC
-
¡û
>A173000239
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
126481
126552
+
Gly
GCC
-
¡û
>WENV180345459
OBLN01000197
[OBLN] sediment metagenome; sediment
21588
21516
-
Gly
GCC
[ENA]
¢þ
>At1490
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
2665058
2664987
-
Gly
GCC
[Ensembl]
¡û
>At1503
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
292399
292470
+
Gly
GCC
[Ensembl]
¡û
>WENV170644810
JMBW01105737
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
13
87
+
Gly
GCC
[ENA]
¢þ
>WENV170723860
LSQX01283842
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
207
133
-
Gly
GCC
[ENA]
¢þ
>WENV170784273
MCHG01000329
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
10220
10149
-
Gly
GCC
[ENA]
¢þ
>WENV170784275
MCHG01000341
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
258
187
-
Gly
GCC
[ENA]
¢þ
>WENV170784369
MCHG01001505
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
2474
2403
-
Gly
GCC
[ENA]
¢þ
>W1910230895
FPAO01000004
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
294034
294108
+
Gly
GCC
[ENA]
¡û
>W1910230898
FPAO01000004
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
294516
294590
+
Gly
GCC
[ENA]
¡û
>W1910230907
FPAO01000007
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
162182
162111
-
Gly
GCC
[ENA]
¡û
>W1910471810
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
214776
214705
-
Gly
GCC
[ENA]
¡û
>W1910569267
JJOR01000158
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
19834
19763
-
Gly
GCC
[ENA]
¡û
>W1910569312
JJOS01000094
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
24502
24573
+
Gly
GCC
[ENA]
¡û
>W1910569377
JJOT01000132
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
28476
28405
-
Gly
GCC
[ENA]
¡û
>W1910569399
JJOU01000111
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
510
439
-
Gly
GCC
[ENA]
¡û
>W1910569710
JJPA01000154
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
14759
14688
-
Gly
GCC
[ENA]
¡û
>W1910569745
JJPB01000052
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
6063
5992
-
Gly
GCC
[ENA]
¡û
>W1910569803
JJPC01000036
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
76361
76290
-
Gly
GCC
[ENA]
¡û
>W1910569842
JJPD01000015
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
16954
16883
-
Gly
GCC
[ENA]
¡û
>W1910569893
JJPE01000007
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
17426
17355
-
Gly
GCC
[ENA]
¡û
>W1910569986
JJPF01000139
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
94432
94361
-
Gly
GCC
[ENA]
¡û
>W1910570017
JJPG01000092
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
94266
94195
-
Gly
GCC
[ENA]
¡û
>W1910570064
JJPH01000053
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
17426
17355
-
Gly
GCC
[ENA]
¡û
>W1910570122
JJPI01000080
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
54403
54474
+
Gly
GCC
[ENA]
¡û
>W1910570144
JJPJ01000008
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
18886
18815
-
Gly
GCC
[ENA]
¡û
>W1910570228
JJPK01000091
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
58269
58198
-
Gly
GCC
[ENA]
¡û
>W1910570265
JJPL01000080
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
17427
17356
-
Gly
GCC
[ENA]
¡û
>W1910570308
JJPM01000087
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
16958
16887
-
Gly
GCC
[ENA]
¡û
>W1910570368
JJPN01000086
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
7797
7726
-
Gly
GCC
[ENA]
¡û
>W1910570418
JJPO01000082
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
58199
58128
-
Gly
GCC
[ENA]
¡û
>W1910570456
JJPP01000032
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
19691
19620
-
Gly
GCC
[ENA]
¡û
>W1910570534
JJPQ01000119
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
7795
7724
-
Gly
GCC
[ENA]
¡û
>W1910570580
JJPR01000097
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
18420
18349
-
Gly
GCC
[ENA]
¡û
>W1910570642
JJPS01000209
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
14109
14180
+
Gly
GCC
[ENA]
¡û
>W1910570652
JJPT01000024
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
49303
49374
+
Gly
GCC
[ENA]
¡û
>W1910570704
JJPU01000040
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
37501
37572
+
Gly
GCC
[ENA]
¡û
>W1910570707
JJPU01000040
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
37856
37927
+
Gly
GCC
[ENA]
¡û
>W1910570723
JJPU01000108
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
18920
18849
-
Gly
GCC
[ENA]
¡û
>W1910570769
JJPV01000036
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
175019
174948
-
Gly
GCC
[ENA]
¡û
>W1910570825
JJPW01000048
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
57834
57763
-
Gly
GCC
[ENA]
¡û
>W1910570900
JJPX01000186
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
16955
16884
-
Gly
GCC
[ENA]
¡û
>W1910570946
JJPY01000110
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
57820
57749
-
Gly
GCC
[ENA]
¡û
>W1910570983
JJPZ01000121
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
7797
7726
-
Gly
GCC
[ENA]
¡û
>W1910571022
JJQA01000085
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
48435
48506
+
Gly
GCC
[ENA]
¡û
>W1910571052
JJQB01000011
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
26701
26772
+
Gly
GCC
[ENA]
¡û
>W1910571111
JJQC01000042
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
50076
50147
+
Gly
GCC
[ENA]
¡û
>W1910571197
JJQD01000208
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
6166
6095
-
Gly
GCC
[ENA]
¡û
>W1910571235
JJQE01000135
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
17426
17355
-
Gly
GCC
[ENA]
¡û
>W1910571263
JJQF01000036
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
41020
41091
+
Gly
GCC
[ENA]
¡û
>W1910571266
JJQF01000036
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
41375
41446
+
Gly
GCC
[ENA]
¡û
>W1910571273
JJQF01000053
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
20125
20196
+
Gly
GCC
[ENA]
¡û
>W1910571350
JJQG01000148
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
58057
57986
-
Gly
GCC
[ENA]
¡û
>W1910571381
JJQH01000113
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
60643
60714
+
Gly
GCC
[ENA]
¡û
>W1910571421
JJQI01000031
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
6738
6809
+
Gly
GCC
[ENA]
¡û
>W1910571477
JJQJ01000121
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
596
525
-
Gly
GCC
[ENA]
¡û
>W1910571547
JJQK01000244
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
6096
6025
-
Gly
GCC
[ENA]
¡û
>W1910571656
JJQM01000097
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
58331
58260
-
Gly
GCC
[ENA]
¡û
>W1910571695
JJQN01000058
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
6140
6069
-
Gly
GCC
[ENA]
¡û
>W1910571754
JJQO01000083
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
50770
50699
-
Gly
GCC
[ENA]
¡û
>W1910571837
JJQP01000230
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
6083
6012
-
Gly
GCC
[ENA]
¡û
>W1910571862
JJQQ01000039
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
19868
19797
-
Gly
GCC
[ENA]
¡û
>W1910571947
JJQR01000151
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
50716
50645
-
Gly
GCC
[ENA]
¡û
>W1910571959
JJQS01000027
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
19691
19620
-
Gly
GCC
[ENA]
¡û
>W1910572010
JJQT01000030
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
19725
19654
-
Gly
GCC
[ENA]
¡û
>W1910572047
JJQU01000004
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
24475
24546
+
Gly
GCC
[ENA]
¡û
>W1910572068
JJQU01000093
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
78513
78442
-
Gly
GCC
[ENA]
¡û
>W1910572071
JJQU01000093
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
78158
78087
-
Gly
GCC
[ENA]
¡û
>W1910572113
JJQV01000031
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
154916
154845
-
Gly
GCC
[ENA]
¡û
>W1910572156
JJQW01000011
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
58273
58202
-
Gly
GCC
[ENA]
¡û
>W1910572226
JJQX01000131
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
19664
19593
-
Gly
GCC
[ENA]
¡û
>W1910572336
JJQZ01000126
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
61906
61977
+
Gly
GCC
[ENA]
¡û
>W1910572381
JJRA01000097
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
19828
19757
-
Gly
GCC
[ENA]
¡û
>W1910572436
JJRB01000119
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
66901
66830
-
Gly
GCC
[ENA]
¡û
>W1910575058
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
3674221
3674292
+
Gly
GCC
[ENA]
¡û
>W1910582961
JWTK01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
214700
214629
-
Gly
GCC
[ENA]
¡û
>W1910635263
LMVP01000512
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
7271
7342
+
Gly
GCC
[ENA]
¡û
>W1910635266
LMVP01000512
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
7654
7725
+
Gly
GCC
[ENA]
¡û
>W1910635282
LMVP01000555
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
3506
3577
+
Gly
GCC
[ENA]
¡û
>W1910655392
LZPK01000156
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
7733
7804
+
Gly
GCC
[ENA]
¡û
>W1910661855
MBKP01000013
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
35244
35172
-
Gly
GCC
[ENA]
¡û
>W1910672549
MCNQ01000008
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
247850
247779
-
Gly
GCC
[ENA]
¡û
>W1910694770
MDTP02000014
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
6925
6854
-
Gly
GCC
[ENA]
¡û
>W1910694799
MDTP02000121
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
258
187
-
Gly
GCC
[ENA]
¡û
>W1911633762
PVBU01000005
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
48470
48541
+
Gly
GCC
[ENA]
¡û
>W1610000030
AAAR03000009
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
38726
38655
-
Gly
GCC
[ENA]
¡û
>W1610046902
BBCW01000030
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
52441
52512
+
Gly
GCC
[ENA]
¡û
>W1610048592
BBEF01000002
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
45290
45361
+
Gly
GCC
[ENA]
¡û
>W1611052486
MAFX01000001
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
20060
19989
-
Gly
GCC
[ENA]
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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