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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400777 (106 seq.)
>A171003605
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1086303
1086230
-
Arg
GCG
-
¡û
>A171004365
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
4248282
4248209
-
Arg
GCG
-
¡û
>A171004514
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2119214
2119287
+
Arg
GCG
-
¡û
>A171004599
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1927995
1927922
-
Arg
GCG
-
¡û
>A171004614
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
630365
630439
+
Arg
GCG
-
¡û
>A171004666
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
600020
600094
+
Arg
GCG
-
¡û
>A171004792
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4644918
4644845
-
Arg
GCG
-
¡û
>A171004845
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4598860
4598787
-
Arg
GCG
-
¡û
>A171004902
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
5044004
5043931
-
Arg
GCG
-
¡û
>A171004928
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
285283
285356
+
Arg
GCG
-
¡û
>A171004980
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
285034
285107
+
Arg
GCG
-
¡û
>A171005032
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
280751
280824
+
Arg
GCG
-
¡û
>A171005084
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
277575
277648
+
Arg
GCG
-
¡û
>A171005137
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
288639
288712
+
Arg
GCG
-
¡û
>A171005216
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
3793865
3793938
+
Arg
GCG
-
¡û
>A171005241
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
344459
344532
+
Arg
GCG
-
¡û
>A171005321
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
4313509
4313436
-
Arg
GCG
-
¡û
>A171005395
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
215479
215552
+
Arg
GCG
-
¡û
>A171005450
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
215438
215511
+
Arg
GCG
-
¡û
>A171005527
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4749122
4749195
+
Arg
GCG
-
¡û
>A171005586
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
4287716
4287643
-
Arg
GCG
-
¡û
>A171005635
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
4203530
4203457
-
Arg
GCG
-
¡û
>WENV180345490
OBLN01000332
[OBLN] sediment metagenome; sediment
226
153
-
Arg
GCG
[ENA]
¢þ
>WENV170008185
AMZC01003929
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1346
1273
-
Arg
GCG
[ENA]
¢þ
>At1430
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5434469
5434398
-
Arg
GCG
[Ensembl]
¡û
>At1478
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1315751
1315680
-
Arg
GCG
[Ensembl]
¡û
>At1535
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1273925
1273854
-
Arg
GCG
[Ensembl]
¡û
>WENV170644036
JMBV01024577
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
182
109
-
Arg
GCG
[ENA]
¢þ
>WENV170645207
JMBX01018788
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
182
109
-
Arg
GCG
[ENA]
¢þ
>WENV170686697
LFRM01159554
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
30909
30836
-
Arg
GCG
[ENA]
¢þ
>WENV170724217
LSQX01297578
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
444
371
-
Arg
GCG
[ENA]
¢þ
>WENV170725899
LSQX01360154
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2778
2851
+
Arg
GCG
[ENA]
¢þ
>WENV170784288
MCHG01000471
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
7343
7416
+
Arg
GCG
[ENA]
¢þ
>WENV170784373
MCHG01001810
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
1891
1964
+
Arg
GCG
[ENA]
¢þ
>W1910230873
FPAO01000001
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
62646
62573
-
Arg
GCG
[ENA]
¡û
>W1910569259
JJOR01000136
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
43134
43207
+
Arg
GCG
[ENA]
¡û
>W1910569314
JJOS01000107
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
973
900
-
Arg
GCG
[ENA]
¡û
>W1910569364
JJOT01000089
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
41718
41791
+
Arg
GCG
[ENA]
¡û
>W1910569386
JJOU01000043
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
52035
52108
+
Arg
GCG
[ENA]
¡û
>W1910569462
JJOV01000078
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
31621
31694
+
Arg
GCG
[ENA]
¡û
>W1910569490
JJOW01000104
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
9509
9436
-
Arg
GCG
[ENA]
¡û
>W1910569531
JJOX01000022
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
69803
69876
+
Arg
GCG
[ENA]
¡û
>W1910569613
JJOY01000048
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
68138
68211
+
Arg
GCG
[ENA]
¡û
>W1910569661
JJOZ01000050
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
68176
68249
+
Arg
GCG
[ENA]
¡û
>W1910569713
JJPA01000174
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
8236
8309
+
Arg
GCG
[ENA]
¡û
>W1910569776
JJPB01000131
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
60745
60818
+
Arg
GCG
[ENA]
¡û
>W1910569784
JJPC01000002
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
8236
8309
+
Arg
GCG
[ENA]
¡û
>W1910569837
JJPD01000004
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
61833
61906
+
Arg
GCG
[ENA]
¡û
>W1910569908
JJPE01000066
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
61833
61906
+
Arg
GCG
[ENA]
¡û
>W1910569987
JJPF01000141
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
61833
61906
+
Arg
GCG
[ENA]
¡û
>W1910570023
JJPG01000113
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
150689
150616
-
Arg
GCG
[ENA]
¡û
>W1910570082
JJPH01000120
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
61833
61906
+
Arg
GCG
[ENA]
¡û
>W1910570096
JJPI01000015
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
38876
38949
+
Arg
GCG
[ENA]
¡û
>W1910570159
JJPJ01000045
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
38851
38924
+
Arg
GCG
[ENA]
¡û
>W1910570202
JJPK01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
226493
226420
-
Arg
GCG
[ENA]
¡û
>W1910570275
JJPL01000121
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
8236
8309
+
Arg
GCG
[ENA]
¡û
>W1910570313
JJPM01000130
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
9668
9741
+
Arg
GCG
[ENA]
¡û
>W1910570375
JJPN01000108
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
38384
38457
+
Arg
GCG
[ENA]
¡û
>W1910570430
JJPO01000130
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
5531
5604
+
Arg
GCG
[ENA]
¡û
>W1910570457
JJPP01000037
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
50889
50962
+
Arg
GCG
[ENA]
¡û
>W1910570522
JJPQ01000084
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
62045
62118
+
Arg
GCG
[ENA]
¡û
>W1910570591
JJPR01000132
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
76455
76528
+
Arg
GCG
[ENA]
¡û
>W1910570638
JJPS01000195
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
67554
67627
+
Arg
GCG
[ENA]
¡û
>W1910570661
JJPT01000032
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
151803
151876
+
Arg
GCG
[ENA]
¡û
>W1910570735
JJPU01000154
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
38912
38985
+
Arg
GCG
[ENA]
¡û
>W1910570780
JJPV01000076
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
38236
38309
+
Arg
GCG
[ENA]
¡û
>W1910570843
JJPW01000105
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
38735
38808
+
Arg
GCG
[ENA]
¡û
>W1910570869
JJPX01000072
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
70254
70327
+
Arg
GCG
[ENA]
¡û
>W1910570906
JJPY01000016
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
62100
62173
+
Arg
GCG
[ENA]
¡û
>W1910570978
JJPZ01000101
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
38310
38383
+
Arg
GCG
[ENA]
¡û
>W1910571003
JJQA01000010
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
75614
75687
+
Arg
GCG
[ENA]
¡û
>W1910571099
JJQB01000140
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
68534
68607
+
Arg
GCG
[ENA]
¡û
>W1910571102
JJQC01000005
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
75599
75672
+
Arg
GCG
[ENA]
¡û
>W1910571159
JJQD01000036
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
2946
3019
+
Arg
GCG
[ENA]
¡û
>W1910571237
JJQE01000150
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
61833
61906
+
Arg
GCG
[ENA]
¡û
>W1910571281
JJQF01000095
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
67669
67742
+
Arg
GCG
[ENA]
¡û
>W1910571318
JJQG01000078
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
41734
41807
+
Arg
GCG
[ENA]
¡û
>W1910571399
JJQH01000196
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
41765
41838
+
Arg
GCG
[ENA]
¡û
>W1910571407
JJQI01000004
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
86150
86223
+
Arg
GCG
[ENA]
¡û
>W1910571474
JJQJ01000092
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
43134
43207
+
Arg
GCG
[ENA]
¡û
>W1910571513
JJQK01000039
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
66930
67003
+
Arg
GCG
[ENA]
¡û
>W1910571566
JJQL01000002
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
35875
35948
+
Arg
GCG
[ENA]
¡û
>W1910571626
JJQM01000046
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
41758
41831
+
Arg
GCG
[ENA]
¡û
>W1910571679
JJQN01000017
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
5533
5606
+
Arg
GCG
[ENA]
¡û
>W1910571765
JJQO01000163
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
43133
43206
+
Arg
GCG
[ENA]
¡û
>W1910571825
JJQP01000165
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
68621
68694
+
Arg
GCG
[ENA]
¡û
>W1910571867
JJQQ01000061
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
132296
132369
+
Arg
GCG
[ENA]
¡û
>W1910571909
JJQR01000026
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
41739
41812
+
Arg
GCG
[ENA]
¡û
>W1910571981
JJQS01000069
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
41763
41836
+
Arg
GCG
[ENA]
¡û
>W1910572014
JJQT01000055
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
46100
46173
+
Arg
GCG
[ENA]
¡û
>W1910572059
JJQU01000053
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
974
901
-
Arg
GCG
[ENA]
¡û
>W1910572126
JJQV01000056
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
92080
92153
+
Arg
GCG
[ENA]
¡û
>W1910572184
JJQW01000111
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
41765
41838
+
Arg
GCG
[ENA]
¡û
>W1910572219
JJQX01000069
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
43134
43207
+
Arg
GCG
[ENA]
¡û
>W1910572264
JJQY01000074
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
34341
34268
-
Arg
GCG
[ENA]
¡û
>W1910572323
JJQZ01000106
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
91978
92051
+
Arg
GCG
[ENA]
¡û
>W1910572374
JJRA01000089
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
42943
43016
+
Arg
GCG
[ENA]
¡û
>W1910572437
JJRB01000121
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
41758
41831
+
Arg
GCG
[ENA]
¡û
>W1910575077
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
602291
602218
-
Arg
GCG
[ENA]
¡û
>W1910635240
LMVP01000068
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
39059
38986
-
Arg
GCG
[ENA]
¡û
>W1910655399
LZPK01000230
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
17107
17180
+
Arg
GCG
[ENA]
¡û
>W1910694774
MDTP02000051
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
20869
20796
-
Arg
GCG
[ENA]
¡û
>W1610000024
AAAR03000005
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
63986
64059
+
Pseudo
GCG
[ENA]
¡û
>W1610046898
BBCW01000028
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
43415
43488
+
Pseudo
GCG
[ENA]
¡û
>W1610048595
BBEF01000009
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
1251
1178
-
Pseudo
GCG
[ENA]
¡û
>W1610670277
LKAZ01000057
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
65993
65920
-
Pseudo
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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