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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400780 (16 seq.)
>A171004382
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1463826
1463755
-
Pseudo
GCA
-
¡û
>A171004511
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
413508
413579
+
Pseudo
GCA
-
¡û
>A171004611
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
491353
491282
-
Pseudo
GCA
-
¡û
>A171005300
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
1306075
1306146
+
Pseudo
GCA
-
¡û
>A171005301
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
1556452
1556523
+
Pseudo
GCA
-
¡û
>A171005536
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
3001163
3001092
-
Pseudo
GCA
-
¡û
>A171005567
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
1663948
1664019
+
Pseudo
GCA
-
¡û
>A171005652
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
1470194
1470123
-
Pseudo
GCA
-
¡û
>WENV170008205
AMZC01004592
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
2291
2362
+
Cys
GCA
[ENA]
¢þ
>WENV170691668
LFRM01409766
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4068
3997
-
Cys
GCA
[ENA]
¢þ
>W1910230901
FPAO01000004
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
35560
35489
-
Cys
GCA
[ENA]
¡û
>W1910635235
LMVP01000032
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
14074
14003
-
Cys
GCA
[ENA]
¡û
>W1910635247
LMVP01000134
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
749
820
+
Cys
GCA
[ENA]
¡û
>W1910655373
LZPK01000015
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
13863
13792
-
Cys
GCA
[ENA]
¡û
>W1610000045
AAAR03000019
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
66195
66266
+
Cys
GCA
[ENA]
¡û
>W1610048622
BBEF01000097
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
3111
3182
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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