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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400783 (59 seq.)
>A171004366
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
3578737
3578666
-
Arg
CCG
-
¡û
>A171004520
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2869963
2870035
+
Arg
CCG
-
¡û
>A171004605
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1160628
1160556
-
Arg
CCG
-
¡û
>A171004796
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4024830
4024758
-
Arg
CCG
-
¡û
>A171005142
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
790414
790486
+
Arg
CCG
-
¡û
>A171005313
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3615687
3615758
+
Arg
CCG
-
¡û
>A171005397
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1254602
1254673
+
Arg
CCG
-
¡û
>A171005452
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1237263
1237334
+
Arg
CCG
-
¡û
>A171005550
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
929333
929262
-
Arg
CCG
-
¡û
>A171005587
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3591269
3591198
-
Arg
CCG
-
¡û
>A171005636
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3513345
3513274
-
Arg
CCG
-
¡û
>WENV180345611
OBLN01001016
[OBLN] sediment metagenome; sediment
8244
8316
+
Arg
CCG
[ENA]
¢þ
>At1423
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
4673856
4673785
-
Arg
CCG
[Ensembl]
¡û
>At1433
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
261706
261777
+
Arg
CCG
[Ensembl]
¡û
>WENV170684749
LFRM01056583
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
287
215
-
Arg
CCG
[ENA]
¢þ
>W1910230889
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
20514
20442
-
Arg
CCG
[ENA]
¡û
>W1910569309
JJOS01000086
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
25383
25455
+
Arg
CCG
[ENA]
¡û
>W1910569378
JJOT01000134
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
24294
24366
+
Arg
CCG
[ENA]
¡û
>W1910569422
JJOU01000207
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
2319
2247
-
Arg
CCG
[ENA]
¡û
>W1910569630
JJOZ01000006
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
217777
217848
+
Arg
CCG
[ENA]
¡û
>W1910569728
JJPA01000238
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
24241
24313
+
Arg
CCG
[ENA]
¡û
>W1910569917
JJPE01000107
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
24286
24358
+
Arg
CCG
[ENA]
¡û
>W1910569968
JJPF01000071
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
24265
24337
+
Arg
CCG
[ENA]
¡û
>W1910570039
JJPG01000157
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
24335
24407
+
Arg
CCG
[ENA]
¡û
>W1910570078
JJPH01000105
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
24272
24344
+
Arg
CCG
[ENA]
¡û
>W1910570091
JJPI01000001
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
11752
11824
+
Arg
CCG
[ENA]
¡û
>W1910570175
JJPJ01000067
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
29721
29793
+
Arg
CCG
[ENA]
¡û
>W1910570224
JJPK01000085
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
29400
29472
+
Arg
CCG
[ENA]
¡û
>W1910570481
JJPP01000133
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
51846
51774
-
Arg
CCG
[ENA]
¡û
>W1910570571
JJPR01000089
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
29554
29626
+
Arg
CCG
[ENA]
¡û
>W1910570698
JJPU01000005
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
11773
11845
+
Arg
CCG
[ENA]
¡û
>W1910570861
JJPX01000043
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
29463
29535
+
Arg
CCG
[ENA]
¡û
>W1910570947
JJPY01000122
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
29619
29691
+
Arg
CCG
[ENA]
¡û
>W1910571014
JJQA01000038
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
25305
25233
-
Arg
CCG
[ENA]
¡û
>W1910571055
JJQB01000016
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
24576
24648
+
Arg
CCG
[ENA]
¡û
>W1910571110
JJQC01000038
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
22563
22635
+
Arg
CCG
[ENA]
¡û
>W1910571172
JJQD01000070
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
9330
9402
+
Arg
CCG
[ENA]
¡û
>W1910571242
JJQE01000159
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
24279
24351
+
Arg
CCG
[ENA]
¡û
>W1910571259
JJQF01000033
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
24469
24541
+
Arg
CCG
[ENA]
¡û
>W1910571334
JJQG01000115
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
11776
11848
+
Arg
CCG
[ENA]
¡û
>W1910571388
JJQH01000153
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
11774
11846
+
Arg
CCG
[ENA]
¡û
>W1910571665
JJQM01000148
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
24279
24351
+
Arg
CCG
[ENA]
¡û
>W1910571793
JJQO01000340
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
24286
24358
+
Arg
CCG
[ENA]
¡û
>W1910571827
JJQP01000182
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
9722
9794
+
Arg
CCG
[ENA]
¡û
>W1910572063
JJQU01000066
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
5062
4990
-
Arg
CCG
[ENA]
¡û
>W1910572138
JJQV01000091
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
25383
25455
+
Arg
CCG
[ENA]
¡û
>W1910572153
JJQW01000004
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
25376
25448
+
Arg
CCG
[ENA]
¡û
>W1910572228
JJQX01000154
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
11767
11839
+
Arg
CCG
[ENA]
¡û
>W1910572274
JJQY01000099
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
37916
37987
+
Arg
CCG
[ENA]
¡û
>W1910572354
JJRA01000019
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
25517
25589
+
Arg
CCG
[ENA]
¡û
>W1910575082
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
109956
109884
-
Arg
CCG
[ENA]
¡û
>W1910635273
LMVP01000526
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
6751
6680
-
Arg
CCG
[ENA]
¡û
>W1910655398
LZPK01000215
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
1620
1549
-
Arg
CCG
[ENA]
¡û
>W1610000020
AAAR03000003
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
17393
17322
-
Pseudo
CCG
[ENA]
¡û
>W1610045099
BBBC01000015
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
24241
24313
+
Pseudo
CCG
[ENA]
¡û
>W1610046912
BBCW01000051
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
686
759
+
Pseudo
CCG
[ENA]
¡û
>W1610048623
BBEF01000103
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
6870
6941
+
Pseudo
CCG
[ENA]
¡û
>W1610605084
LFRP01000009
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
287
215
-
Pseudo
CCG
[ENA]
¡û
>W1610670280
LKAZ01000071
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
16523
16451
-
Pseudo
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK