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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400828 (104 seq.)
>W131241841
BASD01000027
Campylobacterota
Helicobacter fennelliae MRY12-0050 [BASD]
62761
62687
-
Asn
GTT
[ENA]
¡û
>W131241847
BASD01000031
Campylobacterota
Helicobacter fennelliae MRY12-0050 [BASD]
29156
29082
-
Asn
GTT
[ENA]
¡û
>C171097699
CP019645
Campylobacterota
Helicobacter bilis AAQJH [CP019645]
1389603
1389529
-
Asn
GTT
-
¡û
>W131145080
AQFW01000005
Campylobacterota
Helicobacter bilis WiWa [AQFW]
47667
47741
+
Asn
GTT
[ENA]
¡û
>C010557
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
438133
438207
+
Asn
GTT
[Ensembl]
¡û
>WENV180116928
OARB01000076
[OARB] human gut metagenome; ENVO:feces
11224
11150
-
Asn
GTT
[ENA]
¢þ
>WENV180117828
OARM01000285
[OARM] human gut metagenome; ENVO:feces
1221
1147
-
Asn
GTT
[ENA]
¢þ
>WENV180229080
OBCH01000099
[OBCH] human gut metagenome; human gut
22165
22239
+
Asn
GTT
[ENA]
¢þ
>W08010341
ABQT01000034
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
29127
29201
+
Asn
GTT
[ENA]
¡û
>WENV181207994
OFBA01006356
[OFBA] metagenome; hydrothermal vent
886
960
+
Asn
GTT
[ENA]
¢þ
>W141204213
AZJI01000005
Campylobacterota
Helicobacter macacae MIT 99-5501 [AZJI]
232372
232298
-
Asn
GTT
[ENA]
¡û
>W141204252
AZJJ01000002
Campylobacterota
Helicobacter canis NCTC 12740 [AZJJ]
97091
97165
+
Asn
GTT
[ENA]
¡û
>W141275675
JADE01000003
Campylobacterota
Helicobacter pametensis ATCC 51478 [JADE]
34580
34654
+
Asn
GTT
[ENA]
¡û
>WENV183641485
OQVL01045765
[OQVL] human gut metagenome; human gut
1137
1211
+
Asn
GTT
[ENA]
¢þ
>WENV183648250
OQVS01009614
[OQVS] human gut metagenome; human gut
2456
2530
+
Asn
GTT
[ENA]
¢þ
>C181062580
CP022347
Campylobacterota
Campylobacter avium LMG 24591 [CP022347]
1290554
1290480
-
Asn
GTT
-
¡û
>C191000201
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
664007
664081
+
Asn
GTT
-
¡û
>C191002276
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
690841
690915
+
Asn
GTT
-
¡û
>C191002331
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
1297604
1297530
-
Asn
GTT
-
¡û
>C191003924
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
1296470
1296396
-
Asn
GTT
-
¡û
>C191006431
AP019005
Campylobacterota
Hydrogenimonas sp. [AP019005]
1694625
1694699
+
Asn
GTT
-
¡û
>C191209079
LR134366
Campylobacterota
Wolinella succinogenes NCTC11488 [LR134366]
1399906
1399980
+
Asn
GTT
-
¡û
>C191213746
LR134518
Campylobacterota
Helicobacter cholecystus NCTC13205 [LR134518]
399565
399491
-
Asn
GTT
-
¡û
>W141701701
JMKW01000017
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
30754
30680
-
Asn
GTT
[ENA]
¡û
>W09119131
ACDN01000020
Campylobacterota
Helicobacter bilis ATCC 43879 [ACDN]
27426
27352
-
Asn
GTT
[ENA]
¡û
>W1910546137
FZMI01000033
Campylobacterota
Helicobacter cinaedi [FZMI]
31503
31577
+
Asn
GTT
[ENA]
¡û
>W1910546179
FZMJ01000021
Campylobacterota
Helicobacter cinaedi [FZMJ]
15053
14979
-
Asn
GTT
[ENA]
¡û
>W1910546223
FZML01000010
Campylobacterota
Helicobacter muridarum [FZML]
171045
171119
+
Asn
GTT
[ENA]
¡û
>W1910546277
FZMM01000018
Campylobacterota
Helicobacter muridarum [FZMM]
1372
1298
-
Asn
GTT
[ENA]
¡û
>W1910546310
FZMN01000017
Campylobacterota
Helicobacter muridarum [FZMN]
38998
38924
-
Asn
GTT
[ENA]
¡û
>W1910546500
FZMS01000048
Campylobacterota
Helicobacter bilis [FZMS]
17954
17880
-
Asn
GTT
[ENA]
¡û
>W1910546529
FZMT01000013
Campylobacterota
Helicobacter bilis [FZMT]
2329
2403
+
Asn
GTT
[ENA]
¡û
>W1910546796
FZND01000047
Campylobacterota
Helicobacter trogontum [FZND]
87808
87734
-
Asn
GTT
[ENA]
¡û
>W1910546825
FZNE01000003
Campylobacterota
Helicobacter cholecystus [FZNE]
7509
7583
+
Asn
GTT
[ENA]
¡û
>W1910546853
FZNF01000010
Campylobacterota
Helicobacter trogontum [FZNF]
135629
135555
-
Asn
GTT
[ENA]
¡û
>W1910546895
FZNG01000025
Campylobacterota
Helicobacter trogontum [FZNG]
153636
153562
-
Asn
GTT
[ENA]
¡û
>W1910549538
FZPI01000002
Campylobacterota
Helicobacter pametensis [FZPI]
521107
521033
-
Asn
GTT
[ENA]
¡û
>W1910549617
FZPK01000025
Campylobacterota
Helicobacter rappini [FZPK]
27445
27371
-
Asn
GTT
[ENA]
¡û
>W1910549672
FZPM01000006
Campylobacterota
Helicobacter aurati [FZPM]
42497
42423
-
Asn
GTT
[ENA]
¡û
>W1910549738
FZPO01000002
Campylobacterota
Helicobacter equorum [FZPO]
28183
28109
-
Asn
GTT
[ENA]
¡û
>W1910549798
FZPP01000021
Campylobacterota
Helicobacter marmotae [FZPP]
16860
16786
-
Asn
GTT
[ENA]
¡û
>W1910550638
FZRC01000016
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZRC]
50252
50178
-
Asn
GTT
[ENA]
¡û
>W1910852911
NBIU01000011
Campylobacterota
Helicobacter valdiviensis WBE14 [NBIU]
23626
23700
+
Asn
GTT
[ENA]
¡û
>W1910889356
NESU01000012
Campylobacterota
Helicobacter sp. TUL [NESU]
49803
49877
+
Asn
GTT
[ENA]
¡û
>W1910915009
NHYM01000010
Campylobacterota
Helicobacter sp. 16-1353 [NHYM]
46345
46419
+
Asn
GTT
[ENA]
¡û
>W1910995344
NKYN01000004
Campylobacterota
Campylobacter avium Jun-87 [NKYN]
198260
198186
-
Asn
GTT
[ENA]
¡û
>W1911770809
QXJF01000005
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
84496
84422
-
Asn
GTT
[ENA]
¡û
>W1911770849
QXJG01000005
Campylobacterota
Helicobacter burdigaliensis CNRCH 2005/566H [QXJG]
363
289
-
Asn
GTT
[ENA]
¡û
>W1810002677
BEYY01000253
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
8137
8211
+
Asn
GTT
[ENA]
¡û
>W1810002716
BEYZ01000181
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
8128
8202
+
Asn
GTT
[ENA]
¡û
>W1810002754
BEZB01000229
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
20828
20902
+
Asn
GTT
[ENA]
¡û
>W1810002787
BEZC01000260
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
20847
20921
+
Asn
GTT
[ENA]
¡û
>W1810002831
BEZD01000297
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
14315
14241
-
Asn
GTT
[ENA]
¡û
>W1810002843
BEZE01000162
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
8125
8199
+
Asn
GTT
[ENA]
¡û
>W1810002875
BEZF01000108
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
14317
14243
-
Asn
GTT
[ENA]
¡û
>W1810002923
BEZG01000139
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
8126
8200
+
Asn
GTT
[ENA]
¡û
>W1810002946
BEZH01000044
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
8126
8200
+
Asn
GTT
[ENA]
¡û
>W1810003001
BEZI01000167
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
8127
8201
+
Asn
GTT
[ENA]
¡û
>W1810003016
BEZJ01000038
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
29102
29176
+
Asn
GTT
[ENA]
¡û
>W1810003061
BEZK01000055
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
21130
21204
+
Asn
GTT
[ENA]
¡û
>W1810003115
BEZL01000209
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
20806
20880
+
Asn
GTT
[ENA]
¡û
>W1810003156
BEZM01000234
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
37263
37189
-
Asn
GTT
[ENA]
¡û
>W1810003190
BEZN01000223
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
20832
20906
+
Asn
GTT
[ENA]
¡û
>W1810003209
BEZO01000136
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
12343
12417
+
Asn
GTT
[ENA]
¡û
>W1810003240
BEZP01000143
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
8126
8200
+
Asn
GTT
[ENA]
¡û
>W1810003266
BEZQ01000035
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
8126
8200
+
Asn
GTT
[ENA]
¡û
>W1810003336
BEZR01000207
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
14318
14244
-
Asn
GTT
[ENA]
¡û
>W1810003357
BEZS01000092
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
8125
8199
+
Asn
GTT
[ENA]
¡û
>W1810010696
BGKD01000123
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
20833
20907
+
Asn
GTT
[ENA]
¡û
>W1810010745
BGKE01000191
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
8118
8192
+
Asn
GTT
[ENA]
¡û
>W1810010752
BGKF01000011
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
23523
23597
+
Asn
GTT
[ENA]
¡û
>W1810010799
BGKG01000126
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
8116
8190
+
Asn
GTT
[ENA]
¡û
>W1810010846
BGKH01000085
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
23521
23595
+
Asn
GTT
[ENA]
¡û
>W1810046389
NXLM01000002
Campylobacterota
Helicobacter sp. MIT 99-10781 [NXLM]
54499
54573
+
Asn
GTT
[ENA]
¡û
>W1810046463
NXLO01000001
Campylobacterota
Helicobacter sp. MIT 99-5507 [NXLO]
67245
67319
+
Asn
GTT
[ENA]
¡û
>W1810046499
NXLP01000001
Campylobacterota
Helicobacter sp. MIT 14-3879 [NXLP]
163771
163697
-
Asn
GTT
[ENA]
¡û
>W1810046551
NXLQ01000002
Campylobacterota
Helicobacter didelphidarum MIT 17-337 [NXLQ]
24551
24477
-
Asn
GTT
[ENA]
¡û
>W1810046600
NXLR01000008
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
26710
26636
-
Asn
GTT
[ENA]
¡û
>W1810046664
NXLT01000004
Campylobacterota
Helicobacter equorum MIT 12-6600 [NXLT]
134335
134409
+
Asn
GTT
[ENA]
¡û
>W1810046700
NXLU01000002
Campylobacterota
Helicobacter cholecystus ATCC 700242 [NXLU]
303541
303467
-
Asn
GTT
[ENA]
¡û
>W1810046758
NXLW01000003
Campylobacterota
Helicobacter aurati MIT 97-5075 [NXLW]
124127
124201
+
Asn
GTT
[ENA]
¡û
>W1511350734
JRMP01000178
Campylobacterota
Helicobacter saguini MIT 97-6194 [JRMP]
708769
708843
+
Asn
GTT
[ENA]
¡û
>W1511350790
JRMQ01000002
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
204320
204246
-
Asn
GTT
[ENA]
¡û
>W1511350808
JRMR01000003
Campylobacterota
Campylobacter sp. MIT 97-5078 [JRMR]
89402
89476
+
Asn
GTT
[ENA]
¡û
>W1511350810
JRMR01000003
Campylobacterota
Campylobacter sp. MIT 97-5078 [JRMR]
137491
137417
-
Asn
GTT
[ENA]
¡û
>W1511350818
JRMR01000010
Campylobacterota
Campylobacter sp. MIT 97-5078 [JRMR]
22617
22691
+
Asn
GTT
[ENA]
¡û
>W1511350861
JRMS01000060
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
10198
10124
-
Asn
GTT
[ENA]
¡û
>W1511353096
JROY01000010
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
10042
10116
+
Asn
GTT
[ENA]
¡û
>W1511353154
JROZ01000002
Campylobacterota
Helicobacter sp. MIT 05-5293 [JROZ]
107389
107315
-
Asn
GTT
[ENA]
¡û
>W1511353314
JRPD01000007
Campylobacterota
Helicobacter muridarum ST1 [JRPD]
20652
20578
-
Asn
GTT
[ENA]
¡û
>W1511353322
JRPE01000045
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
1523
1597
+
Asn
GTT
[ENA]
¡û
>W1511353359
JRPF01000001
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
413959
413885
-
Asn
GTT
[ENA]
¡û
>W1511353408
JRPG01000032
Campylobacterota
Helicobacter bilis ATCC 51630 [JRPG]
15554
15628
+
Asn
GTT
[ENA]
¡û
>W1511353427
JRPH01000001
Campylobacterota
Helicobacter bilis Missouri [JRPH]
202805
202879
+
Asn
GTT
[ENA]
¡û
>W1511353465
JRPI01000001
Campylobacterota
Helicobacter bilis ATCC 49314 [JRPI]
636785
636711
-
Asn
GTT
[ENA]
¡û
>W1511353506
JRPJ01000001
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
179995
179921
-
Asn
GTT
[ENA]
¡û
>W1511353559
JRPK01000147
Campylobacterota
Helicobacter trogontum ATCC 49310 [JRPK]
1298
1372
+
Asn
GTT
[ENA]
¡û
>W1511353588
JRPL01000001
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
164107
164033
-
Asn
GTT
[ENA]
¡û
>W1511353841
JRPR01000009
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
43667
43741
+
Asn
GTT
[ENA]
¡û
>C121001350
AP012344
Campylobacterota
Helicobacter cinaedi PAGU611 [AP012344]
664193
664267
+
Asn
GTT
[Ensembl]
¡û
>C161081181
CP014991
Campylobacterota
Helicobacter himalayensis YS1 [CP014991]
1125960
1126034
+
Asn
GTT
-
¡û
>C161108046
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
1611314
1611388
+
Asn
GTT
[Ensembl]
¡û
>C131000556
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
1301413
1301339
-
Asn
GTT
[Ensembl]
¡û
>W1710572947
FOXB01000010
Campylobacterota
Hydrogenimonas thermophila [FOXB]
58192
58266
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK