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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400839 (51 seq.)
>W131092172
AOIF01000158
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
3806
3732
-
Arg
ACG
[ENA]
¡û
>W1711293904
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
102001
102075
+
Arg
ACG
[ENA]
¡û
>W1711293977
LZZA01000063
Bacillota
Clostridium saccharobutylicum [LZZA]
18282
18356
+
Arg
ACG
[ENA]
¡û
>W1711294011
LZZB01000004
Bacillota
Clostridium beijerinckii [LZZB]
96233
96159
-
Arg
ACG
[ENA]
¡û
>W1711294078
LZZC01000043
Bacillota
Clostridium beijerinckii [LZZC]
14878
14952
+
Arg
ACG
[ENA]
¡û
>W1711294114
LZZD01000017
Bacillota
Clostridium beijerinckii [LZZD]
69527
69453
-
Arg
ACG
[ENA]
¡û
>W1711294162
LZZE01000020
Bacillota
Clostridium beijerinckii [LZZE]
11350
11424
+
Arg
ACG
[ENA]
¡û
>W1711294210
LZZF01000011
Bacillota
Clostridium beijerinckii [LZZF]
11266
11340
+
Arg
ACG
[ENA]
¡û
>W1711294238
LZZG01000022
Bacillota
Clostridium beijerinckii [LZZG]
11365
11439
+
Arg
ACG
[ENA]
¡û
>W1711294284
LZZH01000006
Bacillota
Clostridium beijerinckii [LZZH]
92487
92413
-
Arg
ACG
[ENA]
¡û
>W1711294296
LZZI01000006
Bacillota
Clostridium beijerinckii [LZZI]
3253
3327
+
Arg
ACG
[ENA]
¡û
>W1711294366
LZZJ01000049
Bacillota
Clostridium beijerinckii [LZZJ]
76294
76220
-
Arg
ACG
[ENA]
¡û
>W1711294485
LZZK01000078
Bacillota
Clostridium beijerinckii [LZZK]
15250
15324
+
Arg
ACG
[ENA]
¡û
>W1711294500
LZZL01000057
Bacillota
Clostridium sp. BL-8 [LZZL]
38288
38214
-
Arg
ACG
[ENA]
¡û
>W1711294564
LZZM01000231
Bacillota
Clostridium puniceum [LZZM]
12496
12570
+
Arg
ACG
[ENA]
¡û
>W1711320438
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
15445
15519
+
Arg
ACG
[ENA]
¡û
>W1711794372
MWMH01000014
Bacillota
Clostridium beijerinckii [MWMH]
105800
105726
-
Arg
ACG
[ENA]
¡û
>W1712096563
NHZR01000014
Bacillota
Clostridium diolis [NHZR]
111235
111161
-
Arg
ACG
[ENA]
¡û
>C171045558
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
32573
32647
+
Arg
ACG
-
¡û
>C171045649
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
29422
29496
+
Arg
ACG
-
¡û
>C171045709
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
32573
32647
+
Arg
ACG
-
¡û
>C171045801
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
29259
29333
+
Arg
ACG
-
¡û
>C171045878
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
32574
32648
+
Arg
ACG
-
¡û
>C171045963
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
32573
32647
+
Arg
ACG
-
¡û
>W131156900
AQQG01000144
Bacillota
Clostridium diolis DSM 15410 [AQQG]
75918
75844
-
Arg
ACG
[ENA]
¡û
>C005037
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
29427
29501
+
Arg
ACG
[Ensembl]
¡û
>w011464
AALO01000014
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
107868
107792
-
Arg
ACG
[ENA]
¡û
>WENV180232216
OBCO01000199
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
11295
11369
+
Arg
ACG
[ENA]
¢þ
>WENV180233186
OBCP01000182
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
11295
11369
+
Arg
ACG
[ENA]
¢þ
>WENV180569810
OCLR01000491
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
16996
16922
-
Arg
ACG
[ENA]
¢þ
>WENV180570506
OCLS01000178
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
11295
11369
+
Arg
ACG
[ENA]
¢þ
>WENV180571522
OCLT01000155
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
14797
14871
+
Arg
ACG
[ENA]
¢þ
>WENV180573805
OCLW01000187
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
11295
11369
+
Arg
ACG
[ENA]
¢þ
>WENV180639825
OCRL01000153
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
112762
112688
-
Arg
ACG
[ENA]
¢þ
>WENV180640753
OCRM01000155
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
14797
14871
+
Arg
ACG
[ENA]
¢þ
>W141083137
AUPH01001957
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
852
926
+
Arg
ACG
[ENA]
¡û
>W141200280
AYXR01000037
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
50075
50001
-
Arg
ACG
[ENA]
¡û
>WENV170661916
JXWV01150683
[JXWV] soil metagenome; rice field; organic FYM Plot
108
182
+
Arg
ACG
[ENA]
¢þ
>C181203603
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
29402
29476
+
Arg
ACG
-
¡û
>C141007570
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
32573
32647
+
Arg
ACG
[Ensembl]
¡û
>W1810147481
PIQP01000011
Bacillota
Clostridium beijerinckii WB [PIQP]
112344
112270
-
Arg
ACG
[ENA]
¡û
>W1810250471
PQCR01000006
Bacillota
Clostridium sp. 2-1 [PQCR]
110838
110764
-
Arg
ACG
[ENA]
¡û
>W1810271494
PRKY01000079
Bacillota
Clostridium diolis WST [PRKY]
1330
1256
-
Arg
ACG
[ENA]
¡û
>C151088316
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6157635
6157561
-
Arg
ACG
-
¡û
>W11176262
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
280922
280996
+
Arg
ACG
[ENA]
¡û
>C161023425
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
14914
14988
+
Arg
ACG
[Ensembl]
¡û
>W121102360
AKWA01000055
Bacillota
Clostridium beijerinckii G117 [AKWA]
112344
112270
-
Arg
ACG
[ENA]
¡û
>W1610030610
AYXL01000138
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
4238
4312
+
Arg
ACG
[ENA]
¡û
>C131012896
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
29039
29113
+
Arg
ACG
[Ensembl]
¡û
>W1611062461
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
15445
15519
+
Arg
ACG
[ENA]
¡û
>W1710027733
AYXL01000138
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
4238
4312
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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