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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400853 (59 seq.)
>W1710872119
LMLT01000004
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
279386
279460
+
Gln
CTG
[ENA]
¡û
>W1710872120
LMLT01000004
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
279566
279640
+
Gln
CTG
[ENA]
¡û
>W1711220364
LXQJ01000041
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
131972
131898
-
Gln
CTG
[ENA]
¡û
>W1711386591
MEFO01000025
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
27191
27265
+
Gln
CTG
[ENA]
¡û
>W1711387237
MEGL01000003
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
27204
27130
-
Gln
CTG
[ENA]
¡û
>W1711424197
MIDW01000072
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
466
392
-
Gln
CTG
[ENA]
¡û
>W1711506475
MKWK01000027
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
77909
77983
+
Gln
CTG
[ENA]
¡û
>C171050501
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
2814642
2814568
-
Gln
CTG
-
¡û
>C171050502
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
2814454
2814380
-
Gln
CTG
-
¡û
>WENV183738874
PJUE01000331
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
36460
36534
+
Gln
CTG
[ENA]
¢þ
>WENV183738875
PJUE01000331
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
36636
36710
+
Gln
CTG
[ENA]
¢þ
>WENV183740053
PJUF01000224
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
48180
48254
+
Gln
CTG
[ENA]
¢þ
>WENV183740054
PJUF01000224
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
48356
48430
+
Gln
CTG
[ENA]
¢þ
>WENV170661294
JXWU01153362
[JXWU] soil metagenome; rice field; organic control Plot
26
100
+
Gln
CTG
[ENA]
¢þ
>WENV170707599
LNAP01026719
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5403
5477
+
Gln
CTG
[ENA]
¢þ
>WENV170707882
LNAP01037794
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
319
393
+
Gln
CTG
[ENA]
¢þ
>WENV170966656
MTEY01002725
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
194
120
-
Gln
CTG
[ENA]
¢þ
>C181039134
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
3134197
3134271
+
Gln
CTG
-
¡û
>C191165664
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
654501
654575
+
Gln
CTG
-
¡û
>W1911218348
NRQR01000012
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
54789
54863
+
Gln
CTG
[ENA]
¡û
>W1911283697
NTJF01000011
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
47533
47607
+
Gln
CTG
[ENA]
¡û
>W1911283742
NTJG01000012
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
55471
55397
-
Gln
CTG
[ENA]
¡û
>W1911405242
NWQL01000006
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
84841
84915
+
Gln
CTG
[ENA]
¡û
>W1911708908
QPFB01000001
Gammaproteobacteria
Stenotrophomonas sp. ATCM1_4 [QPFB]
1202550
1202476
-
Gln
CTG
[ENA]
¡û
>W1911708909
QPFB01000001
Gammaproteobacteria
Stenotrophomonas sp. ATCM1_4 [QPFB]
1202373
1202299
-
Gln
CTG
[ENA]
¡û
>C161047154
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
3487340
3487414
+
Gln
CTG
[Ensembl]
¡û
>C161070299
CP014274
Gammaproteobacteria
Stenotrophomonas sp. KCTC 12332 YM1 [CP014274]
3664383
3664457
+
Gln
CTG
[Ensembl]
¡û
>C161070300
CP014274
Gammaproteobacteria
Stenotrophomonas sp. KCTC 12332 YM1 [CP014274]
3664571
3664645
+
Gln
CTG
[Ensembl]
¡û
>W1610027345
AVPU01000007
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
48966
49040
+
Gln
CTG
[ENA]
¡û
>W1610042786
BAZI01000183
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4848
4774
-
Gln
CTG
[ENA]
¡û
>W1610042787
BAZI01000183
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4659
4585
-
Gln
CTG
[ENA]
¡û
>W121071223
AJXS01000458
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
9621
9695
+
Gln
CTG
[ENA]
¡û
>W1610547636
JUKH01000004
Gammaproteobacteria
Luteimonas abyssi [JUKH]
141240
141314
+
Gln
CTG
[ENA]
¡û
>W1610586756
LDJG01000015
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
129979
129905
-
Gln
CTG
[ENA]
¡û
>W1610586757
LDJG01000015
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
129799
129725
-
Gln
CTG
[ENA]
¡û
>W1610586827
LDJH01000017
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
86441
86367
-
Gln
CTG
[ENA]
¡û
>W1610586911
LDJJ01000005
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
26261
26335
+
Gln
CTG
[ENA]
¡û
>W1610586912
LDJJ01000005
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
26440
26514
+
Gln
CTG
[ENA]
¡û
>W1610587049
LDJL01000009
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
71713
71787
+
Gln
CTG
[ENA]
¡û
>W1610587136
LDJM01000022
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
94317
94243
-
Gln
CTG
[ENA]
¡û
>W1610587137
LDJM01000022
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
94152
94078
-
Gln
CTG
[ENA]
¡û
>W1610587273
LDJO01000075
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
23306
23380
+
Gln
CTG
[ENA]
¡û
>W1610734465
LMLT01000004
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
279386
279460
+
Gln
CTG
[ENA]
¡û
>W1610734466
LMLT01000004
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
279566
279640
+
Gln
CTG
[ENA]
¡û
>W1710023579
AVPU01000007
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
48966
49040
+
Gln
CTG
[ENA]
¡û
>W1710039946
BAZI01000183
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4848
4774
-
Gln
CTG
[ENA]
¡û
>W1710039947
BAZI01000183
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4659
4585
-
Gln
CTG
[ENA]
¡û
>W1710544547
FOAX01000001
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
93400
93474
+
Gln
CTG
[ENA]
¡û
>W1710567345
FOSR01000003
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
110575
110649
+
Gln
CTG
[ENA]
¡û
>W1710650881
JUKH01000004
Gammaproteobacteria
Luteimonas abyssi [JUKH]
141240
141314
+
Gln
CTG
[ENA]
¡û
>W1710705886
LDJG01000015
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
129979
129905
-
Gln
CTG
[ENA]
¡û
>W1710705887
LDJG01000015
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
129799
129725
-
Gln
CTG
[ENA]
¡û
>W1710705957
LDJH01000017
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
86441
86367
-
Gln
CTG
[ENA]
¡û
>W1710706041
LDJJ01000005
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
26261
26335
+
Gln
CTG
[ENA]
¡û
>W1710706042
LDJJ01000005
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
26440
26514
+
Gln
CTG
[ENA]
¡û
>W1710706179
LDJL01000009
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
71713
71787
+
Gln
CTG
[ENA]
¡û
>W1710706266
LDJM01000022
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
94317
94243
-
Gln
CTG
[ENA]
¡û
>W1710706267
LDJM01000022
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
94152
94078
-
Gln
CTG
[ENA]
¡û
>W1710706403
LDJO01000075
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
23306
23380
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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