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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400897 (95 seq.)
>W1710778323
LJCV01000269
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
64712
64638
-
Gln
TTG
[ENA]
¡û
>W1710778473
LJCX01000031
Actinomycetota
Actinobacteria bacterium OV320 [LJCX]
487667
487593
-
Gln
TTG
[ENA]
¡û
>W1710862813
LMEQ01000001
Actinomycetota
Streptomyces sp. Root1310 [LMEQ]
1768914
1768988
+
Gln
TTG
[ENA]
¡û
>W1710884198
LMWK01000028
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
162141
162215
+
Gln
TTG
[ENA]
¡û
>W1710884924
LMWV01000032
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
151184
151258
+
Gln
TTG
[ENA]
¡û
>W1710884984
LMWW01000053
Actinomycetota
Streptomyces griseoruber [LMWW]
131733
131805
+
Gln
TTG
[ENA]
¡û
>W1711049595
LRQW01000776
Actinomycetota
Streptomyces scabiei [LRQW]
10763
10689
-
Gln
TTG
[ENA]
¡û
>W1711049659
LRQX01000937
Actinomycetota
Streptomyces scabiei [LRQX]
10656
10582
-
Gln
TTG
[ENA]
¡û
>W1711052232
LRSS01000849
Actinomycetota
Streptomyces scabiei [LRSS]
10759
10685
-
Gln
TTG
[ENA]
¡û
>W1711054062
LRTM01000873
Actinomycetota
Streptomyces scabiei [LRTM]
8971
8897
-
Gln
TTG
[ENA]
¡û
>W1711054127
LRTN01000970
Actinomycetota
Streptomyces scabiei [LRTN]
10689
10615
-
Gln
TTG
[ENA]
¡û
>W1711054197
LRTO01000817
Actinomycetota
Streptomyces scabiei [LRTO]
10676
10602
-
Gln
TTG
[ENA]
¡û
>W1711054342
LRTQ01000763
Actinomycetota
Streptomyces europaeiscabiei [LRTQ]
10654
10580
-
Gln
TTG
[ENA]
¡û
>W1711054392
LRTR01000320
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
29447
29373
-
Gln
TTG
[ENA]
¡û
>W1711054457
LRTS01000817
Actinomycetota
Streptomyces caniscabiei Dec-96 [LRTS]
4988
4914
-
Gln
TTG
[ENA]
¡û
>W1711089725
LSZY01000656
Actinomycetota
Streptomyces scabiei [LSZY]
10646
10572
-
Gln
TTG
[ENA]
¡û
>W131168608
ARED01000014
Actinomycetota
Streptomyces sp. HmicA12 [ARED]
97560
97632
+
Gln
TTG
[ENA]
¡û
>W131185432
ARTR01000069
Actinomycetota
Streptomyces sp. 303MFCol5.2 [ARTR]
102119
102045
-
Gln
TTG
[ENA]
¡û
>W131185473
ARTS01000040
Actinomycetota
Streptomyces sp. 351MFTsu5.1 [ARTS]
114360
114286
-
Gln
TTG
[ENA]
¡û
>W1711236478
LYDS01000481
Actinomycetota
Streptomyces acidiscabies [LYDS]
24527
24453
-
Gln
TTG
[ENA]
¡û
>W1711236545
LYDT01000665
Actinomycetota
Streptomyces acidiscabies [LYDT]
26303
26229
-
Gln
TTG
[ENA]
¡û
>W1711236610
LYDU01000558
Actinomycetota
Streptomyces acidiscabies [LYDU]
26233
26159
-
Gln
TTG
[ENA]
¡û
>W1711236691
LYDV01000448
Actinomycetota
Streptomyces acidiscabies [LYDV]
5524
5598
+
Gln
TTG
[ENA]
¡û
>W131241215
BARF01000135
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
30297
30371
+
Gln
TTG
[ENA]
¡û
>W131241238
BARG01000014
Actinomycetota
Streptomyces hokutonensis R1-NS-10 [BARG]
31897
31823
-
Gln
TTG
[ENA]
¡û
>W131087143
AOCF01000057
Actinomycetota
Streptomyces bottropensis ATCC 25435 [AOCF]
124447
124521
+
Gln
TTG
[ENA]
¡û
>W131185292
ARTP01000004
Actinomycetota
Streptomyces bottropensis ATCC 25435 [ARTP]
3964730
3964804
+
Gln
TTG
[ENA]
¡û
>W1711743791
MUFT01000236
Actinomycetota
Streptomyces acidiscabies [MUFT]
199
273
+
Gln
TTG
[ENA]
¡û
>W1711783156
MVNU01000878
Actinomycetota
Streptomyces scabiei [MVNU]
187
261
+
Gln
TTG
[ENA]
¡û
>W1711783180
MVNV01000125
Actinomycetota
Streptomyces caniscabiei scabiei [MVNV]
13517
13443
-
Gln
TTG
[ENA]
¡û
>W1711783240
MVNW01000035
Actinomycetota
Streptomyces caniscabiei scabiei [MVNW]
2206
2280
+
Gln
TTG
[ENA]
¡û
>W1711942020
NAVC01000002
Actinomycetota
Streptomyces sp. B9173 [NAVC]
28152
28226
+
Gln
TTG
[ENA]
¡û
>W1712081490
NHOD01000487
Actinomycetota
Streptomyces griseiscabiei scabiei [NHOD]
4817
4743
-
Gln
TTG
[ENA]
¡û
>WENV180039640
LLBY010110597
[LLBY] soil metagenome; soil from tomato rhizosphere
314
386
+
Gln
TTG
[ENA]
¢þ
>C181164808
CP028369
Actinomycetota
Streptomyces sp. P3 [CP028369]
2888824
2888751
-
Gln
TTG
-
¡û
>C191089627
CP032427
Actinomycetota
Streptomyces griseorubiginosus 3E-1 [CP032427]
5543834
5543760
-
Gln
TTG
-
¡û
>C191187353
CP041168
Actinomycetota
Streptomyces griseorubiginosus BTU6 [CP041168]
3905577
3905651
+
Gln
TTG
-
¡û
>W141755459
JNWO01000032
Actinomycetota
Streptomyces xylophagus [JNWO]
107841
107767
-
Gln
TTG
[ENA]
¡û
>W141756431
JNXE01000027
Actinomycetota
Streptomyces sp. NRRL F-525 [JNXE]
36170
36096
-
Gln
TTG
[ENA]
¡û
>W141760813
JOAH01001940
Actinomycetota
Streptomyces sp. NRRL B-24501 [JOAH]
653
725
+
Gln
TTG
[ENA]
¡û
>W141767967
JOEY01000016
Actinomycetota
Streptomyces fulvoviolaceus [JOEY]
89838
89764
-
Gln
TTG
[ENA]
¡û
>W141771039
JOGW01000018
Actinomycetota
Streptomyces sp. NRRL B-3428 NRRL B-3428 [JOGW]
85749
85677
-
Gln
TTG
[ENA]
¡û
>W141808274
JPPW01000143
Actinomycetota
Streptomyces scabiei [JPPW]
8300
8374
+
Gln
TTG
[ENA]
¡û
>W141808391
JPPX01000295
Actinomycetota
Streptomyces scabiei [JPPX]
48480
48406
-
Gln
TTG
[ENA]
¡û
>W141817988
JQLE01000032
Actinomycetota
Streptomyces mirabilis [JQLE]
117216
117144
-
Gln
TTG
[ENA]
¡û
>W1910647363
LXWC01000042
Actinomycetota
Streptomyces sp. ST1015 [LXWC]
27849
27777
-
Gln
TTG
[ENA]
¡û
>W1910647417
LXWD01000045
Actinomycetota
Streptomyces sp. ST1020 [LXWD]
30198
30126
-
Gln
TTG
[ENA]
¡û
>W1911497230
OCNG01000001
Actinomycetota
Streptomyces sp. 1222.2 [OCNG]
5401546
5401472
-
Gln
TTG
[ENA]
¡û
>W1911552881
PCGS01000064
Actinomycetota
Streptomyces acidiscabies ST105 [PCGS]
26777
26705
-
Gln
TTG
[ENA]
¡û
>W1911552969
PCGT01000164
Actinomycetota
Streptomyces scabiei ST129 [PCGT]
4773
4846
+
Gln
TTG
[ENA]
¡û
>W1911553044
PCGU01000311
Actinomycetota
Streptomyces europaeiscabiei ST1229 [PCGU]
10602
10529
-
Gln
TTG
[ENA]
¡û
>W1810586125
QFDR01000079
Actinomycetota
Streptomyces sp. V2 [QFDR]
1468
1540
+
Gln
TTG
[ENA]
¡û
>W1510020944
BBYG01000013
Actinomycetota
Streptomyces sp. NBRC 110468 [BBYG]
127774
127848
+
Gln
TTG
[ENA]
¡û
>C10112533
FN554889
Actinomycetota
Streptomyces scabiei 87.22 [FN554889]
6015796
6015722
-
Gln
TTG
[Ensembl]
¡û
>W1511309913
JPPY01000028
Actinomycetota
Streptomyces acidiscabies NCPPB 4445 [JPPY]
89982
89908
-
Gln
TTG
[ENA]
¡û
>W1511309982
JPPZ01000151
Actinomycetota
Streptomyces stelliscabiei P3825 [JPPZ]
21506
21432
-
Gln
TTG
[ENA]
¡û
>W1511511563
JXTE01000008
Actinomycetota
Streptomyces sp. WM6386 [JXTE]
138028
138100
+
Gln
TTG
[ENA]
¡û
>W1511563876
LACL01000005
Actinomycetota
Streptomyces sp. FxanaA7 [LACL]
167106
167032
-
Gln
TTG
[ENA]
¡û
>W1511595791
LBNJ01000042
Actinomycetota
Streptomyces scabiei NRRL B-16523 [LBNJ]
1335
1409
+
Gln
TTG
[ENA]
¡û
>W1511596122
LBNW01000307
Actinomycetota
Streptomyces stelliscabiei NRRL B-24447 [LBNW]
8739
8813
+
Gln
TTG
[ENA]
¡û
>W1511620676
LCTL01000248
Actinomycetota
Streptomyces europaeiscabiei NRRL B-24443 [LCTL]
303
377
+
Gln
TTG
[ENA]
¡û
>C161090259
CP015726
Actinomycetota
Streptomyces sp. RTd22 [CP015726]
6773878
6773804
-
Gln
TTG
-
¡û
>W121023900
AHBF01000052
Actinomycetota
Streptomyces acidiscabies 84-104 [AHBF]
5297
5371
+
Gln
TTG
[ENA]
¡û
>W1610052351
BBHU01001838
Actinomycetota
Streptomyces phaeofaciens JCM 4814 [BBHU]
441
515
+
Gln
TTG
[ENA]
¡û
>W1610061216
BCMK01000090
Actinomycetota
Streptomyces acidiscabies [BCMK]
22398
22472
+
Gln
TTG
[ENA]
¡û
>W1610061250
BCMM01000009
Actinomycetota
Streptomyces scabiei [BCMM]
127137
127211
+
Gln
TTG
[ENA]
¡û
>W1610633316
LIQQ01000120
Actinomycetota
Streptomyces graminilatus [LIQQ]
12603
12529
-
Gln
TTG
[ENA]
¡û
>W1610633449
LIQS01000253
Actinomycetota
Streptomyces griseoruber [LIQS]
4655
4583
-
Gln
TTG
[ENA]
¡û
>W1610634416
LIRJ01000073
Actinomycetota
Streptomyces silaceus [LIRJ]
5058
5132
+
Gln
TTG
[ENA]
¡û
>W1610634536
LIRL01000048
Actinomycetota
Streptomyces niveiscabiei [LIRL]
1316
1390
+
Gln
TTG
[ENA]
¡û
>W1610642542
LJCV01000269
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
64712
64638
-
Gln
TTG
[ENA]
¡û
>W1610725159
LMEQ01000001
Actinomycetota
Streptomyces sp. Root1310 [LMEQ]
1768914
1768988
+
Gln
TTG
[ENA]
¡û
>W1610746124
LMWK01000028
Actinomycetota
Streptomyces griseorubiginosus phaeopurpureus [LMWK]
162141
162215
+
Gln
TTG
[ENA]
¡û
>W1610746850
LMWV01000032
Actinomycetota
Streptomyces griseorubiginosus [LMWV]
151184
151258
+
Gln
TTG
[ENA]
¡û
>W1610746910
LMWW01000053
Actinomycetota
Streptomyces griseoruber [LMWW]
131733
131805
+
Gln
TTG
[ENA]
¡û
>W1610890788
LRQX01000937
Actinomycetota
Streptomyces scabiei [LRQX]
10656
10582
-
Gln
TTG
[ENA]
¡û
>W1610893420
LRSS01000849
Actinomycetota
Streptomyces scabiei [LRSS]
10759
10685
-
Gln
TTG
[ENA]
¡û
>W1610895250
LRTM01000873
Actinomycetota
Streptomyces scabiei [LRTM]
8971
8897
-
Gln
TTG
[ENA]
¡û
>W1610895315
LRTN01000970
Actinomycetota
Streptomyces scabiei [LRTN]
10689
10615
-
Gln
TTG
[ENA]
¡û
>W1610895385
LRTO01000817
Actinomycetota
Streptomyces scabiei [LRTO]
10676
10602
-
Gln
TTG
[ENA]
¡û
>W1610895530
LRTQ01000763
Actinomycetota
Streptomyces europaeiscabiei [LRTQ]
10654
10580
-
Gln
TTG
[ENA]
¡û
>W1610895580
LRTR01000320
Actinomycetota
Streptomyces europaeiscabiei [LRTR]
29447
29373
-
Gln
TTG
[ENA]
¡û
>W1610895645
LRTS01000817
Actinomycetota
Streptomyces caniscabiei Dec-96 [LRTS]
4988
4914
-
Gln
TTG
[ENA]
¡û
>W1610924182
LSZY01000656
Actinomycetota
Streptomyces scabiei [LSZY]
10646
10572
-
Gln
TTG
[ENA]
¡û
>W1710048729
BBHU01001838
Actinomycetota
Streptomyces phaeofaciens JCM 4814 [BBHU]
441
515
+
Gln
TTG
[ENA]
¡û
>W1710058811
BCMK01000090
Actinomycetota
Streptomyces acidiscabies [BCMK]
22398
22472
+
Gln
TTG
[ENA]
¡û
>W1710058893
BCML01000108
Actinomycetota
Streptomyces acidiscabies [BCML]
4541
4615
+
Gln
TTG
[ENA]
¡û
>W1710058915
BCMM01000009
Actinomycetota
Streptomyces scabiei [BCMM]
127137
127211
+
Gln
TTG
[ENA]
¡û
>W1710082421
BDGW01000111
Actinomycetota
Streptomyces luteocolor [BDGW]
5053
5127
+
Gln
TTG
[ENA]
¡û
>W1710536769
FNTK01000001
Actinomycetota
Streptomyces sp. 3213.3 3213 [FNTK]
6521492
6521418
-
Gln
TTG
[ENA]
¡û
>W1710569980
FOUV01000026
Actinomycetota
Streptomyces sp. cf124 [FOUV]
5828
5902
+
Gln
TTG
[ENA]
¡û
>W1710767748
LIQQ01000120
Actinomycetota
Streptomyces graminilatus [LIQQ]
12603
12529
-
Gln
TTG
[ENA]
¡û
>W1710767881
LIQS01000253
Actinomycetota
Streptomyces griseoruber [LIQS]
4655
4583
-
Gln
TTG
[ENA]
¡û
>W1710768793
LIRJ01000073
Actinomycetota
Streptomyces silaceus [LIRJ]
5058
5132
+
Gln
TTG
[ENA]
¡û
>W1710768913
LIRL01000048
Actinomycetota
Streptomyces niveiscabiei [LIRL]
1316
1390
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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