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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400905 (65 seq.)
>W1711006402
LQOI01000026
Bacillota
Streptococcus lutetiensis [LQOI]
8919
8990
+
Arg
CCG
[ENA]
¡û
>W131166133
ARCF01000001
Bacillota
Streptococcus merionis DSM 19192 [ARCF]
380516
380445
-
Arg
CCG
[ENA]
¡û
>W131231619
AUIP01000003
Bacillota
Streptococcus porci DSM 23759 [AUIP]
42331
42402
+
Arg
CCG
[ENA]
¡û
>WENV180117368
OARK01000526
[OARK] human gut metagenome; ENVO:feces
1449
1520
+
Arg
CCG
[ENA]
¢þ
>WENV180119432
OASD01085220
[OASD] human gut metagenome; ENVO:feces
125
196
+
Arg
CCG
[ENA]
¢þ
>WENV180198735
OBAD01005939
[OBAD] human gut metagenome; ENVO:feces
151
80
-
Arg
CCG
[ENA]
¢þ
>WENV180239216
OBDB01000165
[OBDB] human gut metagenome; human gut
2519
2448
-
Arg
CCG
[ENA]
¢þ
>WENV180402070
OBRN01070367
[OBRN] human gut metagenome; ENVO:feces
78
7
-
Arg
CCG
[ENA]
¢þ
>WENV180402755
OBRQ01046764
[OBRQ] human gut metagenome; ENVO:feces
85
14
-
Arg
CCG
[ENA]
¢þ
>WENV180407944
OBUS01000016
[OBUS] human gut metagenome; faeces
149976
149905
-
Arg
CCG
[ENA]
¢þ
>WENV180411260
OBUY01003858
[OBUY] human gut metagenome; faeces
256
327
+
Arg
CCG
[ENA]
¢þ
>WENV180418697
OBVL01000007
[OBVL] human gut metagenome; faeces
150079
150008
-
Arg
CCG
[ENA]
¢þ
>WENV180482109
OBZG01000081
[OBZG] human gut metagenome; faeces
1717
1788
+
Arg
CCG
[ENA]
¢þ
>W08006841
ABJK02000020
Bacillota
Streptococcus infantarius subsp. infantarius ATCC BAA-102 [ABJK]
8393
8464
+
Arg
CCG
[ENA]
¡û
>W141091782
AUZH01000026
Bacillota
Streptococcus equinus JB1 [AUZH]
40212
40141
-
Arg
CCG
[ENA]
¡û
>WENV181347661
OFMM01016734
[OFMM] human gut metagenome; human gut
1329
1400
+
Arg
CCG
[ENA]
¢þ
>WENV181365907
OFPS01000345
[OFPS] human gut metagenome; human gut
29712
29641
-
Arg
CCG
[ENA]
¢þ
>WENV181438701
OGDJ01002423
[OGDJ] metagenome; Human gut stool
4417
4346
-
Arg
CCG
[ENA]
¢þ
>WENV181516367
OGGX01006370
[OGGX] metagenome; Human gut stool
693
622
-
Arg
CCG
[ENA]
¢þ
>WENV181526942
OGHK01000001
[OGHK] metagenome; Human gut stool
315856
315927
+
Arg
CCG
[ENA]
¢þ
>WENV181561524
OGJD01007451
[OGJD] metagenome; Human gut stool
1501
1430
-
Arg
CCG
[ENA]
¢þ
>WENV181567968
OGJK01000188
[OGJK] metagenome; Human gut stool
41677
41606
-
Arg
CCG
[ENA]
¢þ
>WENV181577635
OGJX01004766
[OGJX] metagenome; Human gut stool
710
781
+
Arg
CCG
[ENA]
¢þ
>WENV181579920
OGJZ01002114
[OGJZ] metagenome; Human gut stool
13059
13130
+
Arg
CCG
[ENA]
¢þ
>WENV181794976
OGRS01008786
[OGRS] human gut metagenome; faeces
1447
1376
-
Arg
CCG
[ENA]
¢þ
>WENV181864176
OGWT01063455
[OGWT] human gut metagenome; faeces
510
581
+
Arg
CCG
[ENA]
¢þ
>WENV181889991
OGXN01002819
[OGXN] human gut metagenome; faeces
9779
9708
-
Arg
CCG
[ENA]
¢þ
>WENV182164430
OHMN01000282
[OHMN] human gut metagenome; faeces
49888
49817
-
Arg
CCG
[ENA]
¢þ
>WENV182185668
OHOG01000571
[OHOG] human gut metagenome; feces
1147
1218
+
Arg
CCG
[ENA]
¢þ
>WENV182406197
OIEX01001452
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
2838
2767
-
Arg
CCG
[ENA]
¢þ
>WENV182413190
OIFX01000157
[OIFX] human gut metagenome; stool
15896
15967
+
Arg
CCG
[ENA]
¢þ
>WENV182437518
OIJJ01006354
[OIJJ] human gut metagenome; human gut
52
123
+
Arg
CCG
[ENA]
¢þ
>WENV182441372
OIKC01020005
[OIKC] human gut metagenome; human gut
171
242
+
Arg
CCG
[ENA]
¢þ
>WENV182458984
OINJ01022633
[OINJ] human gut metagenome; human gut
357
286
-
Arg
CCG
[ENA]
¢þ
>W141261886
CCBC010000129
Bacillota
Streptococcus gallolyticus [CCBC]
10763
10692
-
Arg
CCG
[ENA]
¡û
>WENV182848202
OKKG01000050
[OKKG] human gut metagenome; human gut
39417
39346
-
Arg
CCG
[ENA]
¢þ
>WENV182856239
OKNJ01000018
[OKNJ] human gut metagenome; human gut
39417
39346
-
Arg
CCG
[ENA]
¢þ
>WENV182901392
OKSV01001362
[OKSV] human gut metagenome; feces
1449
1520
+
Arg
CCG
[ENA]
¢þ
>WENV182976075
OKXY01004086
[OKXY] human gut metagenome; human gut
1404
1475
+
Arg
CCG
[ENA]
¢þ
>WENV182991894
OLAR01017859
[OLAR] human gut metagenome; human gut
696
767
+
Arg
CCG
[ENA]
¢þ
>WENV183238171
OLQY01007843
[OLQY] human gut metagenome; faeces
391
462
+
Arg
CCG
[ENA]
¢þ
>WENV183334069
OLWE01052358
[OLWE] human gut metagenome; feces
438
509
+
Arg
CCG
[ENA]
¢þ
>WENV183602648
OODK01000057
[OODK] human gut metagenome; human gut
15883
15954
+
Arg
CCG
[ENA]
¢þ
>WENV183780930
PPYF01188320
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1579
1650
+
Arg
CCG
[ENA]
¢þ
>WENV183785843
PPYF01298416
[PPYF] human gut metagenome; stool from patient with Crohn's disease
59346
59275
-
Arg
CCG
[ENA]
¢þ
>C181207767
LS483348
Bacillota
Streptococcus lutetiensis NCTC8738 [LS483348]
778896
778967
+
Arg
CCG
-
¡û
>C181211229
LS483403
Bacillota
Streptococcus lutetiensis NCTC13774 [LS483403]
746197
746268
+
Arg
CCG
-
¡û
>C181224461
LT906439
Bacillota
Streptococcus merionis NCTC13788 [LT906439]
1087729
1087658
-
Arg
CCG
-
¡û
>C191199829
LR134203
Bacillota
Streptococcus lutetiensis NCTC11436 [LR134203]
990920
990991
+
Arg
CCG
-
¡û
>C191223113
LR594044
Bacillota
Streptococcus lutetiensis NCTC8796 [LR594044]
1031205
1031134
-
Arg
CCG
-
¡û
>W1810069556
PEBL01000006
Bacillota
Streptococcus macedonicus 211MA [PEBL]
543
614
+
Arg
CCG
[ENA]
¡û
>W1810823927
QSHE01000001
Bacillota
Streptococcus lutetiensis AM38-16 [QSHE]
151840
151911
+
Arg
CCG
[ENA]
¡û
>W1810829821
QSLI01000013
Bacillota
Streptococcus lutetiensis AM25-7 [QSLI]
19223
19152
-
Arg
CCG
[ENA]
¡û
>C10111594
FN597254
Bacillota
Streptococcus gallolyticus UCN34 [FN597254]
1034193
1034264
+
Arg
CCG
[Ensembl]
¡û
>W1511530615
JYKU01000010
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
16317
16388
+
Arg
CCG
[ENA]
¡û
>C121010355
CP003295
Bacillota
Streptococcus infantarius subsp. infantarius CJ18 [CP003295]
781743
781814
+
Arg
CCG
[Ensembl]
¡û
>C161059393
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
730122
730193
+
Arg
CCG
[Ensembl]
¡û
>W1610857052
LQOI01000026
Bacillota
Streptococcus lutetiensis [LQOI]
8919
8990
+
Arg
CCG
[ENA]
¡û
>W1710526158
FNKC01000001
Bacillota
Streptococcus equinus [FNKC]
366967
367038
+
Arg
CCG
[ENA]
¡û
>W1710526243
FNKE01000001
Bacillota
Streptococcus equinus [FNKE]
347012
347083
+
Arg
CCG
[ENA]
¡û
>W1710528056
FNMW01000001
Bacillota
Streptococcus equinus [FNMW]
350566
350637
+
Arg
CCG
[ENA]
¡û
>W1710541019
FNXZ01000002
Bacillota
Streptococcus sp. 45 [FNXZ]
352907
352978
+
Arg
CCG
[ENA]
¡û
>W1710549976
FOEX01000001
Bacillota
Streptococcus equinus [FOEX]
259860
259789
-
Arg
CCG
[ENA]
¡û
>W1710557906
FOLK01000002
Bacillota
Streptococcus equinus [FOLK]
110177
110106
-
Arg
CCG
[ENA]
¡û
>W1710568040
FOTG01000003
Bacillota
Streptococcus equinus JB1 [FOTG]
215659
215730
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK