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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400923 (49 seq.)
>W1711505602
MKVR01000047
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
12130
12204
+
His
GTG
[ENA]
¡û
>C171089781
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
4325719
4325645
-
His
GTG
-
¡û
>C015141
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
253378
253452
+
His
GTG
[Ensembl]
¡û
>WENV180285516
OBID01484895
[OBID] metagenome; sludge
209
135
-
His
GTG
[ENA]
¢þ
>WENV181167823
OEIU01081254
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
704
778
+
His
GTG
[ENA]
¢þ
>C181049333
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
353471
353397
-
His
GTG
-
¡û
>W141558426
JHVX01000005
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
216602
216528
-
His
GTG
[ENA]
¡û
>W141565172
JIBI01000052
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [JIBI]
15599
15525
-
His
GTG
[ENA]
¡û
>W1910228560
FNVK01000010
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
50986
50912
-
His
GTG
[ENA]
¡û
>W1910338850
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
1353375
1353301
-
His
GTG
[ENA]
¡û
>W1911496911
OCMZ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
411240
411166
-
His
GTG
[ENA]
¡û
>W1810463595
PZZR01000003
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
382968
382894
-
His
GTG
[ENA]
¡û
>W1810463654
PZZS01000015
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
2151
2077
-
His
GTG
[ENA]
¡û
>W1810464103
QAAC01000028
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
14315
14389
+
His
GTG
[ENA]
¡û
>W1810476944
QAOK01000012
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
53682
53756
+
His
GTG
[ENA]
¡û
>W1810477124
QAOO01000009
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
64520
64446
-
His
GTG
[ENA]
¡û
>W1810477290
QAOR01000028
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
14315
14389
+
His
GTG
[ENA]
¡û
>W1810477422
QAOU01000004
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
68165
68239
+
His
GTG
[ENA]
¡û
>W1810503437
QBKC01000011
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
31367
31293
-
His
GTG
[ENA]
¡û
>W1810696198
QLTB01000015
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
61113
61187
+
His
GTG
[ENA]
¡û
>W1810696245
QLTC01000028
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
3641
3567
-
His
GTG
[ENA]
¡û
>W1810696249
QLTD01000001
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
58238
58312
+
His
GTG
[ENA]
¡û
>C151082870
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
3145848
3145774
-
His
GTG
[Ensembl]
¡û
>C151094446
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
1993751
1993825
+
His
GTG
-
¡û
>W1511508786
JXQM01000026
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
3094
3020
-
His
GTG
[ENA]
¡û
>W1710505969
FMUF01000008
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
20358
20432
+
His
GTG
[ENA]
¡û
>W1710507308
FMVD01000024
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
2341
2267
-
His
GTG
[ENA]
¡û
>W1710507957
FMVQ01000017
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
1506
1432
-
His
GTG
[ENA]
¡û
>W1710509164
FMWY01000022
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
52010
52084
+
His
GTG
[ENA]
¡û
>W1710517430
FNDH01000116
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
590
664
+
His
GTG
[ENA]
¡û
>W1710527366
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
341488
341414
-
His
GTG
[ENA]
¡û
>W1710528517
FNNH01000003
Betaproteobacteria
Nitrosomonas communis [FNNH]
1579
1505
-
His
GTG
[ENA]
¡û
>W1710531185
FNPJ01000008
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
53380
53454
+
His
GTG
[ENA]
¡û
>W1710531588
FNPQ01000045
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
18071
18145
+
His
GTG
[ENA]
¡û
>W1710532576
FNQL01000001
Betaproteobacteria
Nitrosospira multiformis [FNQL]
412976
412902
-
His
GTG
[ENA]
¡û
>W1710545218
FOBH01000019
Betaproteobacteria
Nitrosovibrio tenuis [FOBH]
10105
10031
-
His
GTG
[ENA]
¡û
>W1710547244
FOCT01000012
Betaproteobacteria
Nitrosospira multiformis [FOCT]
66054
66128
+
His
GTG
[ENA]
¡û
>W1710548595
FODX01000006
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
60977
61051
+
His
GTG
[ENA]
¡û
>W1710553106
FOHI01000002
Betaproteobacteria
Nitrosospira multiformis [FOHI]
59982
60056
+
His
GTG
[ENA]
¡û
>W1710563657
FOPV01000034
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
12047
12121
+
His
GTG
[ENA]
¡û
>W1710565293
FORD01000006
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
41835
41761
-
His
GTG
[ENA]
¡û
>W1710569048
FOUB01000026
Betaproteobacteria
Nitrosomonas communis [FOUB]
51677
51751
+
His
GTG
[ENA]
¡û
>W1710569224
FOUF01000020
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
54310
54236
-
His
GTG
[ENA]
¡û
>W1710570780
FOVJ01000003
Betaproteobacteria
Nitrosospira briensis [FOVJ]
46430
46504
+
His
GTG
[ENA]
¡û
>W1710571488
FOVY01000010
Betaproteobacteria
Nitrosospira briensis [FOVY]
79436
79362
-
His
GTG
[ENA]
¡û
>W1710573512
FOXN01000051
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
505
579
+
His
GTG
[ENA]
¡û
>W1710578962
FPBZ01000004
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
59667
59741
+
His
GTG
[ENA]
¡û
>W1710579586
FPIQ01000018
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
2718
2644
-
His
GTG
[ENA]
¡û
>W1710591614
FRBV01000011
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
69528
69454
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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