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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400930 (82 seq.)
>W1711272868
LZFQ01000040
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
131832
131758
-
Phe
GAA
[ENA]
¡û
>W1711711797
MTBG01000028
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
42596
42670
+
Phe
GAA
[ENA]
¡û
>C171064526
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
625717
625791
+
Phe
GAA
-
¡û
>C171081215
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
2339581
2339507
-
Phe
GAA
-
¡û
>C171101130
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
332865
332939
+
Phe
GAA
-
¡û
>w023591
AAXZ01000004
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2150 HTCC2150 [AAXZ]
101921
101845
-
Phe
GAA
[ENA]
¡û
>w011807
AALV01000006
Alphaproteobacteria
Sulfitobacter sp. EE-36 [AALV]
129992
130068
+
Phe
GAA
[ENA]
¡û
>WENV180103532
OAPA01065600
[OAPA] marine metagenome; ENVO:00002010
266
192
-
Phe
GAA
[ENA]
¢þ
>WENV180115766
OAPT01030585
[OAPT] marine metagenome; seawater
250
324
+
Phe
GAA
[ENA]
¢þ
>WENV180214710
OBAP01047001
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
340
414
+
Phe
GAA
[ENA]
¢þ
>WENV180356624
OBNL01001557
[OBNL] marine metagenome; ENVO:00002010
1300
1374
+
Phe
GAA
[ENA]
¢þ
>WENV180375642
OBOL01036924
[OBOL] marine metagenome; Surface water
4
78
+
Phe
GAA
[ENA]
¢þ
>WENV180378834
OBOO01163515
[OBOO] marine metagenome; ENVO 00002150
151
225
+
Phe
GAA
[ENA]
¢þ
>WENV180383586
OBOV01001053
[OBOV] marine metagenome; ENV:00002010
1850
1776
-
Phe
GAA
[ENA]
¢þ
>WENV180390367
OBPK01115940
[OBPK] marine metagenome; Sterile flask
393
319
-
Phe
GAA
[ENA]
¢þ
>W141055334
AONI01000006
Alphaproteobacteria
Litoreibacter arenae DSM 19593 [AONI]
193110
193184
+
Phe
GAA
[ENA]
¡û
>WENV180593946
OCOY01005192
[OCOY] marine metagenome; ENVO:00002010
1068
1142
+
Phe
GAA
[ENA]
¢þ
>WENV181122580
OEFM01053482
[OEFM] marine metagenome; ENVO:00000569 for seawater
214
140
-
Phe
GAA
[ENA]
¢þ
>WENV181122641
OEFM01083147
[OEFM] marine metagenome; ENVO:00000569 for seawater
193
119
-
Phe
GAA
[ENA]
¢þ
>WENV181304972
OFIE01004795
[OFIE] marine metagenome; sea ice
408
334
-
Phe
GAA
[ENA]
¢þ
>WENV181322601
OFKT01004105
[OFKT] marine metagenome; sea ice
408
482
+
Phe
GAA
[ENA]
¢þ
>WENV181324458
OFLE01015592
[OFLE] marine metagenome; sea ice
73
1
-
Phe
GAA
[ENA]
¢þ
>WENV182540345
OJAH01003130
[OJAH] seawater metagenome; Sea water
842
768
-
Phe
GAA
[ENA]
¢þ
>WENV182540830
OJAQ01000019
[OJAQ] seawater metagenome; Sea water
22877
22951
+
Phe
GAA
[ENA]
¢þ
>WENV182541806
OJAU01002946
[OJAU] seawater metagenome; Sea water
1263
1337
+
Phe
GAA
[ENA]
¢þ
>WENV182544151
OJBE01002276
[OJBE] seawater metagenome; Sea water
157
231
+
Phe
GAA
[ENA]
¢þ
>WENV182547988
OJBU01008492
[OJBU] seawater metagenome; Sea water
155
81
-
Phe
GAA
[ENA]
¢þ
>WENV182551841
OJCJ01000199
[OJCJ] seawater metagenome; Sea water
5093
5019
-
Phe
GAA
[ENA]
¢þ
>WENV182554317
OJCU01001137
[OJCU] seawater metagenome; Sea water
1203
1129
-
Phe
GAA
[ENA]
¢þ
>WENV182569491
OJEZ01001888
[OJEZ] seawater metagenome; Sea water
1029
1103
+
Phe
GAA
[ENA]
¢þ
>WENV182584981
OJHH01000014
[OJHH] seawater metagenome; Sea water
37972
38046
+
Phe
GAA
[ENA]
¢þ
>WENV182589047
OJHY01013484
[OJHY] seawater metagenome; Sea water
645
719
+
Phe
GAA
[ENA]
¢þ
>WENV182589319
OJID01000266
[OJID] seawater metagenome; Sea water
4292
4218
-
Phe
GAA
[ENA]
¢þ
>W141284727
JAMC01000002
Alphaproteobacteria
Sulfitobacter donghicola DSW-25 = KCTC 12864 = JCM 14565 [JAMC]
137728
137802
+
Phe
GAA
[ENA]
¡û
>W141290265
JASG01000004
Alphaproteobacteria
Sulfitobacter guttiformis KCTC 32187 [JASG]
431052
431126
+
Phe
GAA
[ENA]
¡û
>WENV183055021
OLGW01001026
[OLGW] seawater metagenome; Sea water
1175
1101
-
Phe
GAA
[ENA]
¢þ
>WENV183056036
OLHH01026120
[OLHH] seawater metagenome; Sea water
220
146
-
Phe
GAA
[ENA]
¢þ
>WENV183057504
OLHL01004517
[OLHL] seawater metagenome; Sea water
1544
1470
-
Phe
GAA
[ENA]
¢þ
>WENV183058542
OLHR01000824
[OLHR] seawater metagenome; Sea water
3120
3046
-
Phe
GAA
[ENA]
¢þ
>WENV183059057
OLHS01002084
[OLHS] seawater metagenome; Sea water
542
468
-
Phe
GAA
[ENA]
¢þ
>WENV183615089
OOEA01053258
[OOEA] marine metagenome; sea ice
413
339
-
Phe
GAA
[ENA]
¢þ
>WENV183616641
OOED01111314
[OOED] marine metagenome; seawater
230
304
+
Phe
GAA
[ENA]
¢þ
>WENV183618873
OOFP01002270
[OOFP] marine metagenome; seawater
994
1068
+
Phe
GAA
[ENA]
¢þ
>WENV183621467
OOFU01001921
[OOFU] marine metagenome; sea ice
551
477
-
Phe
GAA
[ENA]
¢þ
>WENV183624384
OOGD01004882
[OOGD] marine metagenome; sea ice
596
522
-
Phe
GAA
[ENA]
¢þ
>WENV170568669
FLMP01062784
[FLMP] seawater metagenome; seawater
225
151
-
Phe
GAA
[ENA]
¢þ
>WENV170672419
LAZR01000137
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
58394
58468
+
Phe
GAA
[ENA]
¢þ
>WENV170672979
LAZR01003963
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
3
77
+
Phe
GAA
[ENA]
¢þ
>WENV170673182
LAZR01007868
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
28
102
+
Phe
GAA
[ENA]
¢þ
>WENV170738733
LULP01002793
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
628
554
-
Phe
GAA
[ENA]
¢þ
>WENV170756084
LUMO01004544
[LUMO] marine metagenome; Red Sea water column Station 22 - depth 10m
241
167
-
Phe
GAA
[ENA]
¢þ
>WENV170783878
MAAC01019348
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
30418
30344
-
Phe
GAA
[ENA]
¢þ
>WENV170820888
MDSY01013435
[MDSY] marine metagenome; seawater
9150
9224
+
Phe
GAA
[ENA]
¢þ
>WENV170821808
MDSY01028537
[MDSY] marine metagenome; seawater
1489
1563
+
Phe
GAA
[ENA]
¢þ
>WENV170824679
MDSY01080204
[MDSY] marine metagenome; seawater
8648
8574
-
Phe
GAA
[ENA]
¢þ
>WENV170824744
MDSY01081415
[MDSY] marine metagenome; seawater
13959
13885
-
Phe
GAA
[ENA]
¢þ
>WENV170825666
MDSY01097574
[MDSY] marine metagenome; seawater
3363
3289
-
Phe
GAA
[ENA]
¢þ
>WENV170825812
MDSY01100283
[MDSY] marine metagenome; seawater
2829
2755
-
Phe
GAA
[ENA]
¢þ
>WENV170827579
MDSY01132069
[MDSY] marine metagenome; seawater
1084
1158
+
Phe
GAA
[ENA]
¢þ
>C181049340
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
375111
375185
+
Phe
GAA
-
¡û
>C181123379
CP025808
Alphaproteobacteria
Sulfitobacter sp. SK025 [CP025808]
962192
962266
+
Phe
GAA
-
¡û
>W09112272
ABXS01000040
Alphaproteobacteria
Roseobacter sp. GAI101 [ABXS]
123204
123130
-
Phe
GAA
[ENA]
¡û
>W141807891
JPOY01000011
Alphaproteobacteria
Sulfitobacter sp. CB2047 [JPOY]
466542
466616
+
Phe
GAA
[ENA]
¡û
>W1911544912
OUMZ01000007
Alphaproteobacteria
Roseovarius sp. EL26 [OUMZ]
342173
342099
-
Phe
GAA
[ENA]
¡û
>W1911652504
QBBT01000028
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [QBBT]
7176
7102
-
Phe
GAA
[ENA]
¡û
>W1810424130
PYUG01000007
Alphaproteobacteria
Sulfitobacter sp. CB-A [PYUG]
466542
466616
+
Phe
GAA
[ENA]
¡û
>W1810543613
QDKM01000015
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
21554
21628
+
Phe
GAA
[ENA]
¡û
>W1510647435
CVPC01000015
Alphaproteobacteria
Nereida ignava CECT 5292 [CVPC]
41526
41452
-
Phe
GAA
[ENA]
¡û
>W1510647443
CVPC01000034
Alphaproteobacteria
Nereida ignava CECT 5292 [CVPC]
320
246
-
Phe
GAA
[ENA]
¡û
>W1511002450
JGVS01000002
Alphaproteobacteria
Thalassobacter stenotrophicus 1CONIMAR09 [JGVS]
644164
644238
+
Phe
GAA
[ENA]
¡û
>W1511479494
JWIF01000036
Alphaproteobacteria
Halocynthiibacter namhaensis RA2-3 [JWIF]
3690
3764
+
Phe
GAA
[ENA]
¡û
>W11170450
AFPM01000037
Alphaproteobacteria
Oceanicola sp. S124 [AFPM]
490
416
-
Phe
GAA
[ENA]
¡û
>C161038803
CP012023
Alphaproteobacteria
Celeribacter marinus IMCC12053 [CP012023]
2847072
2847146
+
Phe
GAA
[Ensembl]
¡û
>W1610527009
JPUR01000214
Alphaproteobacteria
Marinosulfonomonas sp. PRT-SC04 [JPUR]
24502
24576
+
Phe
GAA
[ENA]
¡û
>W1611032217
LZFQ01000040
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
131832
131758
-
Phe
GAA
[ENA]
¡û
>W1710528269
FNNB01000004
Alphaproteobacteria
Sulfitobacter pontiacus [FNNB]
35551
35477
-
Phe
GAA
[ENA]
¡û
>W1710529874
FNOI01000006
Alphaproteobacteria
Litoreibacter albidus [FNOI]
39809
39883
+
Phe
GAA
[ENA]
¡û
>W1710543306
FNZV01000025
Alphaproteobacteria
Pacificibacter marinus [FNZV]
5311
5237
-
Phe
GAA
[ENA]
¡û
>W1710574834
FOYO01000001
Alphaproteobacteria
Litoreibacter janthinus [FOYO]
1622239
1622313
+
Phe
GAA
[ENA]
¡û
>W1710582681
FQUE01000002
Alphaproteobacteria
Loktanella atrilutea [FQUE]
226381
226307
-
Phe
GAA
[ENA]
¡û
>W1710583500
FQUV01000004
Alphaproteobacteria
Litoreibacter ascidiaceicola [FQUV]
340825
340899
+
Phe
GAA
[ENA]
¡û
>W1710628564
JPUR01000214
Alphaproteobacteria
Marinosulfonomonas sp. PRT-SC04 [JPUR]
24502
24576
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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