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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400971 (53 seq.)
>W131180753
ARNJ01000051
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
120190
120118
-
Glu
TTC
[ENA]
¡û
>W131180754
ARNJ01000051
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
115473
115401
-
Glu
TTC
[ENA]
¡û
>W131215986
ATVL01000009
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
372840
372766
-
Glu
TTC
[ENA]
¡û
>W131215987
ATVL01000009
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
366431
366359
-
Glu
TTC
[ENA]
¡û
>W1711377541
MDZA01000042
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
12187
12113
-
Glu
TTC
[ENA]
¡û
>W1711377582
MDZB01000068
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
40587
40661
+
Glu
TTC
[ENA]
¡û
>W1711377624
MDZC01000021
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
11405
11331
-
Glu
TTC
[ENA]
¡û
>W1711726878
MTSE01000008
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
253274
253346
+
Glu
TTC
[ENA]
¡û
>W1712105577
NIRR01000015
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
52302
52374
+
Glu
TTC
[ENA]
¡û
>W1712105578
NIRR01000015
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
58135
58207
+
Glu
TTC
[ENA]
¡û
>WENV170988925
MWVY01032461
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
365
439
+
Glu
TTC
[ENA]
¢þ
>WENV170988954
MWVY01039610
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
433
505
+
Glu
TTC
[ENA]
¢þ
>WENV170994365
MWWD01086161
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
70
144
+
Glu
TTC
[ENA]
¢þ
>WENV170999452
MWWK01061101
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
255
181
-
Glu
TTC
[ENA]
¢þ
>C181175077
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
370567
370639
+
Glu
TTC
-
¡û
>C191154898
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
1872902
1872830
-
Glu
TTC
-
¡û
>C191183812
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
4110576
4110504
-
Glu
TTC
-
¡û
>W141734742
JNLX01000197
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
25520
25446
-
Glu
TTC
[ENA]
¡û
>W1910547400
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
224212
224284
+
Glu
TTC
[ENA]
¡û
>W1910547401
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
233167
233239
+
Glu
TTC
[ENA]
¡û
>W1910651880
LYMU01000010
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
108924
108996
+
Glu
TTC
[ENA]
¡û
>W1911788157
QYCN01000015
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
166382
166310
-
Glu
TTC
[ENA]
¡û
>W1911788158
QYCN01000015
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
142007
141935
-
Glu
TTC
[ENA]
¡û
>W1810089879
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2598360
2598432
+
Glu
TTC
[ENA]
¡û
>W1810089880
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2599283
2599355
+
Glu
TTC
[ENA]
¡û
>W1810912372
QVLT01000004
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
72464
72392
-
Glu
TTC
[ENA]
¡û
>W1810912373
QVLT01000004
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
71205
71133
-
Glu
TTC
[ENA]
¡û
>C151009426
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3790969
3790895
-
Glu
TTC
[Ensembl]
¡û
>C151009427
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3783471
3783397
-
Glu
TTC
[Ensembl]
¡û
>C151017383
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
2041102
2041028
-
Glu
TTC
[Ensembl]
¡û
>C151017384
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
2031561
2031489
-
Glu
TTC
[Ensembl]
¡û
>C151063991
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2669663
2669735
+
Glu
TTC
[Ensembl]
¡û
>C151063992
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2669879
2669951
+
Glu
TTC
[Ensembl]
¡û
>C151096228
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1175606
1175534
-
Glu
TTC
-
¡û
>C151096229
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1175387
1175315
-
Glu
TTC
-
¡û
>W1511543305
JZIR01000008
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
20390
20318
-
Glu
TTC
[ENA]
¡û
>W1511543306
JZIR01000008
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
11437
11365
-
Glu
TTC
[ENA]
¡û
>W1511582963
LATM01000038
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
2478
2404
-
Glu
TTC
[ENA]
¡û
>C161061560
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
4494962
4495036
+
Glu
TTC
[Ensembl]
¡û
>C161070722
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
2862474
2862548
+
Glu
TTC
[Ensembl]
¡û
>C161077118
CP014771
Bacteroidota
Hymenobacter sp. PAMC 26554 [CP014771]
5243506
5243432
-
Glu
TTC
[Ensembl]
¡û
>W1710530541
FNOV01000002
Bacteroidota
Hymenobacter psychrophilus [FNOV]
322315
322389
+
Glu
TTC
[ENA]
¡û
>W1710530542
FNOV01000002
Bacteroidota
Hymenobacter psychrophilus [FNOV]
322863
322937
+
Glu
TTC
[ENA]
¡û
>W1710553571
FOHS01000002
Bacteroidota
Hymenobacter actinosclerus [FOHS]
745526
745598
+
Glu
TTC
[ENA]
¡û
>W1710553572
FOHS01000002
Bacteroidota
Hymenobacter actinosclerus [FOHS]
750102
750174
+
Glu
TTC
[ENA]
¡û
>W1710573742
FOXS01000003
Bacteroidota
Hymenobacter arizonensis [FOXS]
523756
523682
-
Glu
TTC
[ENA]
¡û
>W1710587475
FQYN01000005
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
207137
207211
+
Glu
TTC
[ENA]
¡û
>W1710587476
FQYN01000005
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
207409
207483
+
Glu
TTC
[ENA]
¡û
>W1710590104
FRAS01000005
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
37615
37541
-
Glu
TTC
[ENA]
¡û
>W1710590105
FRAS01000005
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
31261
31187
-
Glu
TTC
[ENA]
¡û
>W1710605426
FWWW01000087
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
32177
32105
-
Glu
TTC
[ENA]
¡û
>W1710610164
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
543057
542985
-
Glu
TTC
[ENA]
¡û
>W1710610165
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
536779
536707
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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