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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400978 (30 seq.)
>W1711434408
MIMZ01000009
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
134
208
+
Asn
GTT
[ENA]
¡û
>W1711434424
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
286296
286222
-
Asn
GTT
[ENA]
¡û
>C171101793
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2677413
2677487
+
Asn
GTT
-
¡û
>C171101806
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3086719
3086793
+
Asn
GTT
-
¡û
>WENV180177036
OAWD01023647
[OAWD] human gut metagenome; faeces
222
148
-
Asn
GTT
[ENA]
¢þ
>WENV180498676
OCAG01000876
[OCAG] human gut metagenome; faeces
13184
13110
-
Asn
GTT
[ENA]
¢þ
>WENV180504410
OCAN01002420
[OCAN] human gut metagenome; faeces
6519
6445
-
Asn
GTT
[ENA]
¢þ
>WENV180654753
OCVV010359621
[OCVV] gut metagenome; gut
214
140
-
Asn
GTT
[ENA]
¢þ
>WENV180654755
OCVV010359621
[OCVV] gut metagenome; gut
214
140
-
Asn
GTT
[ENA]
¢þ
>WENV180677229
OCVV011631700
[OCVV] gut metagenome; gut
103
177
+
Asn
GTT
[ENA]
¢þ
>WENV180677230
OCVV011631700
[OCVV] gut metagenome; gut
103
177
+
Asn
GTT
[ENA]
¢þ
>WENV181360653
OFMX01063145
[OFMX] human gut metagenome; human gut
247
173
-
Asn
GTT
[ENA]
¢þ
>WENV182405358
OIEV01003504
[OIEV] human gut metagenome; human gut
134
208
+
Asn
GTT
[ENA]
¢þ
>WENV182836558
OKFX01005331
[OKFX] human gut metagenome; human gut
340
266
-
Asn
GTT
[ENA]
¢þ
>C191064419
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3802249
3802323
+
Asn
GTT
-
¡û
>C191064433
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
4283783
4283857
+
Asn
GTT
-
¡û
>C191219494
LR215983
Bacillota
Eubacterium limosum [LR215983]
293265
293339
+
Asn
GTT
-
¡û
>C191219504
LR215983
Bacillota
Eubacterium limosum [LR215983]
733322
733396
+
Asn
GTT
-
¡û
>W1810609750
QGUD01000004
Bacillota
Eubacterium limosum 8486cho [QGUD]
394277
394203
-
Asn
GTT
[ENA]
¡û
>C11108812
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
948934
949008
+
Asn
GTT
[Ensembl]
¡û
>C11108845
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2689370
2689296
-
Asn
GTT
[Ensembl]
¡û
>W1511480186
JWIS01000028
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
328
254
-
Asn
GTT
[ENA]
¡û
>W11144121
AEQN01000006
Bacillota
Pseudoramibacter alactolyticus ATCC 23263 [AEQN]
7
81
+
Asn
GTT
[ENA]
¡û
>C161037806
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3248587
3248513
-
Asn
GTT
[Ensembl]
¡û
>C161037820
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
2825399
2825325
-
Asn
GTT
[Ensembl]
¡û
>W1710525058
FNJF01000043
Bacillota
Eubacterium maltosivorans limosum [FNJF]
12705
12631
-
Asn
GTT
[ENA]
¡û
>W1710571971
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
342
416
+
Asn
GTT
[ENA]
¡û
>W1710571983
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
342
416
+
Asn
GTT
[ENA]
¡û
>W1710591279
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
16
90
+
Asn
GTT
[ENA]
¡û
>W1710591305
FRBP01000012
Bacillota
Eubacterium callanderi [FRBP]
173208
173134
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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