This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401022 (30 seq.)
>W1711411754
MGTN01000013
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
17421
17347
-
Gly
GCC
[ENA]
¡û
>W1711411756
MGTN01000013
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
17258
17184
-
Gly
GCC
[ENA]
¡û
>W1711411757
MGTN01000013
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
17091
17017
-
Gly
GCC
[ENA]
¡û
>WENV180346198
OBLN01038732
[OBLN] sediment metagenome; sediment
648
722
+
Gly
GCC
[ENA]
¢þ
>WENV180347084
OBLN01555463
[OBLN] sediment metagenome; sediment
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV170640629
JFJP01023622
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV170640636
JFJP01023704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
88
14
-
Gly
GCC
[ENA]
¢þ
>WENV170657656
JTFP01007023
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1284
1210
-
Gly
GCC
[ENA]
¢þ
>WENV170657662
JTFP01007545
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
726
800
+
Gly
GCC
[ENA]
¢þ
>WENV170657664
JTFP01007545
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
890
964
+
Gly
GCC
[ENA]
¢þ
>WENV170657665
JTFP01007545
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1069
1143
+
Gly
GCC
[ENA]
¢þ
>C191000281
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
268956
268882
-
Gly
GCC
-
¡û
>C191000283
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
268607
268533
-
Gly
GCC
-
¡û
>W09108816
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
319993
319919
-
Gly
GCC
[ENA]
¡û
>W09108818
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
319829
319755
-
Gly
GCC
[ENA]
¡û
>W09108819
ABTP01000004
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
319650
319576
-
Gly
GCC
[ENA]
¡û
>W09108828
ABTP01000007
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
95812
95886
+
Gly
GCC
[ENA]
¡û
>C10104949
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
1068565
1068639
+
Gly
GCC
[Ensembl]
¡û
>C10104994
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
279882
279808
-
Gly
GCC
[Ensembl]
¡û
>C10104996
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
279718
279644
-
Gly
GCC
[Ensembl]
¡û
>C10104997
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
279539
279465
-
Gly
GCC
[Ensembl]
¡û
>W1710506998
FMUX01000020
Thermodesulfobacteriota
Desulfoluna spongiiphila [FMUX]
6517
6591
+
Gly
GCC
[ENA]
¡û
>W1710507000
FMUX01000020
Thermodesulfobacteriota
Desulfoluna spongiiphila [FMUX]
8951
9025
+
Gly
GCC
[ENA]
¡û
>W1710507023
FMUX01000037
Thermodesulfobacteriota
Desulfoluna spongiiphila [FMUX]
1004
930
-
Gly
GCC
[ENA]
¡û
>W1710566379
FORX01000023
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
27943
28017
+
Gly
GCC
[ENA]
¡û
>W1710566380
FORX01000023
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
28123
28197
+
Gly
GCC
[ENA]
¡û
>W1710568378
FOTO01000007
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
64383
64309
-
Gly
GCC
[ENA]
¡û
>W1710568386
FOTO01000011
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
27711
27785
+
Gly
GCC
[ENA]
¡û
>W1710568388
FOTO01000011
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
27875
27949
+
Gly
GCC
[ENA]
¡û
>W1710568389
FOTO01000011
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
28055
28129
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK