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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401037 (99 seq.)
>W1710852877
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
736190
736116
-
Gln
TTG
[ENA]
¡û
>W1710859426
LMCD01000005
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
82671
82745
+
Gln
TTG
[ENA]
¡û
>W1710859608
LMCG01000027
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
249863
249937
+
Gln
TTG
[ENA]
¡û
>W1710996682
LQBQ01000003
Alphaproteobacteria
Ruegeria marisrubri ZGT118 [LQBQ]
16402
16328
-
Gln
TTG
[ENA]
¡û
>W1711054794
LRUC01000004
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
34276
34350
+
Gln
TTG
[ENA]
¡û
>W1711126404
LUOO01000010
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
21842
21916
+
Gln
TTG
[ENA]
¡û
>W1711126453
LUOP01000011
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
810176
810250
+
Gln
TTG
[ENA]
¡û
>W1711229678
LXYQ01000134
Alphaproteobacteria
Roseovarius indicus [LXYQ]
23298
23224
-
Gln
TTG
[ENA]
¡û
>W1711272865
LZFQ01000040
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
11896
11970
+
Gln
TTG
[ENA]
¡û
>W1711282594
LZNT01000067
Alphaproteobacteria
Ruegeria sp. PBVC088 [LZNT]
24948
24874
-
Gln
TTG
[ENA]
¡û
>W1711424968
MIEL01000026
Alphaproteobacteria
Pseudovibrio brasiliensis Ab134 [MIEL]
75710
75636
-
Gln
TTG
[ENA]
¡û
>W131183032
ARRM01000032
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
57101
57175
+
Gln
TTG
[ENA]
¡û
>W1711704532
MSPP01000008
Alphaproteobacteria
Marivivens niveibacter MCCC 1A06712 [MSPP]
64892
64818
-
Gln
TTG
[ENA]
¡û
>WENV010992
AACY020299017
Marine microbial communities from Global Ocean Sampling (GOS)
2405
2329
-
Gln
TTG
[ENA]
>W1712106674
NIVZ01000004
Alphaproteobacteria
Mameliella alba atlantica [NIVZ]
422748
422822
+
Gln
TTG
[ENA]
¡û
>W1712106718
NIWA01000003
Alphaproteobacteria
Mameliella alba lacteus [NIWA]
421306
421380
+
Gln
TTG
[ENA]
¡û
>W1712106756
NIWB01000002
Alphaproteobacteria
Mameliella alba pacificum [NIWB]
422737
422811
+
Gln
TTG
[ENA]
¡û
>W1712106818
NIWC01000005
Alphaproteobacteria
Mameliella alba phaeodactyli [NIWC]
421305
421379
+
Gln
TTG
[ENA]
¡û
>C171081203
CP018572
Alphaproteobacteria
Marivivens sp. JLT3646 [CP018572]
2219641
2219715
+
Gln
TTG
-
¡û
>C023183
CP000031
Alphaproteobacteria
Ruegeria pomeroyi DSS-3 [CP000031]
636094
636168
+
Gln
TTG
[Ensembl]
¡û
>w023644
AAYA01000011
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
99210
99134
-
Gln
TTG
[ENA]
¡û
>WENV180103116
OAPA01002300
[OAPA] marine metagenome; ENVO:00002010
1616
1690
+
Gln
TTG
[ENA]
¢þ
>WENV180114969
OAPS01084975
[OAPS] marine metagenome; sea water
160
86
-
Gln
TTG
[ENA]
¢þ
>WENV180208687
OBAJ01019510
[OBAJ] marine metagenome; Coastal water
80
154
+
Gln
TTG
[ENA]
¢þ
>WENV180209855
OBAL01029894
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
394
468
+
Gln
TTG
[ENA]
¢þ
>WENV180357495
OBNN01018304
[OBNN] marine metagenome; Coastal water
45
119
+
Gln
TTG
[ENA]
¢þ
>WENV180362033
OBNW01023498
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
325
399
+
Gln
TTG
[ENA]
¢þ
>WENV180384079
OBOW01004771
[OBOW] marine metagenome; seawater
162
236
+
Gln
TTG
[ENA]
¢þ
>WENV180395585
OBPT01046864
[OBPT] marine metagenome; ENVO:00002010 seawater
515
589
+
Gln
TTG
[ENA]
¢þ
>WENV181120623
OEFK01018707
[OEFK] marine metagenome; ENVO:00002010 seawater
372
446
+
Gln
TTG
[ENA]
¢þ
>W141142903
AWRV01000209
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
6147
6221
+
Gln
TTG
[ENA]
¡û
>WENV183716067
PDWI01283594
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
526
600
+
Gln
TTG
[ENA]
¢þ
>WENV183719230
PDWJ01010918
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6718
6792
+
Gln
TTG
[ENA]
¢þ
>WENV170266553
CERE01086250
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1627
1701
+
Gln
TTG
[ENA]
¢þ
>WENV170627091
FUWD013231381
[FUWD] metagenome; unknown
14885
14814
-
Gln
TTG
[ENA]
¢þ
>WENV170628231
FUWD013243720
[FUWD] metagenome; unknown
329061
328990
-
Gln
TTG
[ENA]
¢þ
>WENV170727352
LULE01000003
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
810176
810250
+
Gln
TTG
[ENA]
¢þ
>WENV170733827
LULK01000161
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
4852
4778
-
Gln
TTG
[ENA]
¢þ
>WENV170734784
LULK01019520
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
572
646
+
Gln
TTG
[ENA]
¢þ
>WENV170738900
LULP01006831
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
1024
950
-
Gln
TTG
[ENA]
¢þ
>WENV170739240
LULQ01000037
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
21842
21916
+
Gln
TTG
[ENA]
¢þ
>WENV170756091
LUMO01004812
[LUMO] marine metagenome; Red Sea water column Station 22 - depth 10m
212
286
+
Gln
TTG
[ENA]
¢þ
>WENV170759469
LUMS01025934
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
151
225
+
Gln
TTG
[ENA]
¢þ
>WENV170761010
LUMU01003883
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
1592
1518
-
Gln
TTG
[ENA]
¢þ
>WENV170959106
MKWU01003085
[MKWU] sponge metagenome;
12140
12214
+
Gln
TTG
[ENA]
¢þ
>C181049385
CP021114
Alphaproteobacteria
Aestuarium zhoushanense G7 [CP021114]
519628
519554
-
Gln
TTG
-
¡û
>C181054558
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
3036764
3036838
+
Gln
TTG
-
¡û
>C181060590
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
3353020
3352946
-
Gln
TTG
-
¡û
>C181119665
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
1141446
1141520
+
Gln
TTG
-
¡û
>W09112058
ABXL01000050
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
93302
93228
-
Gln
TTG
[ENA]
¡û
>W09132533
ACNW01000069
Alphaproteobacteria
Citreicella sp. SE45 [ACNW]
6659
6733
+
Gln
TTG
[ENA]
¡û
>W1910212604
FMJB01000060
Alphaproteobacteria
Donghicola eburneus KarMa [FMJB]
29428
29502
+
Gln
TTG
[ENA]
¡û
>W1910499791
FXYF01000015
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
81628
81702
+
Gln
TTG
[ENA]
¡û
>W1911538437
OMOJ01000001
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
646395
646469
+
Gln
TTG
[ENA]
¡û
>W1810364818
PVTN01000025
Alphaproteobacteria
Marivita geojedonensis DSM 29432 [PVTN]
53959
54033
+
Gln
TTG
[ENA]
¡û
>W1810364978
PVTQ01000026
Alphaproteobacteria
Donghicola tyrosinivorans DSM 100212 [PVTQ]
32472
32546
+
Gln
TTG
[ENA]
¡û
>W1810476827
QAOH01000021
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
50131
50205
+
Gln
TTG
[ENA]
¡û
>W1810477614
QAOY01000003
Alphaproteobacteria
Mameliella alba DSM 26384 [QAOY]
25310
25236
-
Gln
TTG
[ENA]
¡û
>C151006759
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
3796606
3796680
+
Gln
TTG
[Ensembl]
¡û
>SRA1023809
SRR035084.181274
454 Sequencing (SRP001805)
99
170
+
Gln
TTG
[SRA]
>SRA1046152
SRR035093.246074
454 Sequencing (SRP001814)
341
412
+
Gln
TTG
[SRA]
>WENV040920
AACY022118138
Marine microbial communities from Global Ocean Sampling (GOS)
898
822
-
Gln
TTG
[ENA]
>W1511387313
JSUQ01000001
Alphaproteobacteria
Mameliella alba UMTAT08 [JSUQ]
420541
420615
+
Gln
TTG
[ENA]
¡û
>W1511564676
LADY01000010
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
21014
20940
-
Gln
TTG
[ENA]
¡û
>W11157644
AFCF01000066
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
129483
129557
+
Gln
TTG
[ENA]
¡û
>W11170454
AFPM01000047
Alphaproteobacteria
Oceanicola sp. S124 [AFPM]
1010
1084
+
Gln
TTG
[ENA]
¡û
>C121006662
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
1344842
1344916
+
Gln
TTG
[Ensembl]
¡û
>W1610042875
BAZK01000014
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
88726
88652
-
Gln
TTG
[ENA]
¡û
>W1610092641
CYPW01000027
Alphaproteobacteria
Shimia marina [CYPW]
275
201
-
Gln
TTG
[ENA]
¡û
>W1610092934
CYSE01000013
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
56705
56779
+
Gln
TTG
[ENA]
¡û
>W1610092969
CYSF01000009
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [CYSF]
147462
147536
+
Gln
TTG
[ENA]
¡û
>W1610716016
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
736190
736116
-
Gln
TTG
[ENA]
¡û
>W1610721772
LMCD01000005
Alphaproteobacteria
Pseudovibrio sp. Ad14 [LMCD]
82671
82745
+
Gln
TTG
[ENA]
¡û
>W1610721954
LMCG01000027
Alphaproteobacteria
Pseudovibrio sp. Ad46 [LMCG]
249863
249937
+
Gln
TTG
[ENA]
¡û
>W1610851339
LQBQ01000003
Alphaproteobacteria
Ruegeria marisrubri ZGT118 [LQBQ]
16402
16328
-
Gln
TTG
[ENA]
¡û
>W1610895840
LRUC01000004
Alphaproteobacteria
Celeribacter ethanolicus NH195 [LRUC]
34276
34350
+
Gln
TTG
[ENA]
¡û
>W1610937337
LUOO01000010
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
21842
21916
+
Gln
TTG
[ENA]
¡û
>W1610937386
LUOP01000011
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
810176
810250
+
Gln
TTG
[ENA]
¡û
>W1611013548
LXYQ01000134
Alphaproteobacteria
Roseovarius indicus [LXYQ]
23298
23224
-
Gln
TTG
[ENA]
¡û
>W1611032214
LZFQ01000040
Alphaproteobacteria
Donghicola sp. JL3646 [LZFQ]
11896
11970
+
Gln
TTG
[ENA]
¡û
>W1710015579
AQQU01000004
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
146341
146267
-
Gln
TTG
[ENA]
¡û
>W1710040035
BAZK01000014
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
88726
88652
-
Gln
TTG
[ENA]
¡û
>W1710095896
CYPW01000027
Alphaproteobacteria
Shimia marina [CYPW]
275
201
-
Gln
TTG
[ENA]
¡û
>W1710096189
CYSE01000013
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
56705
56779
+
Gln
TTG
[ENA]
¡û
>W1710096224
CYSF01000009
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [CYSF]
147462
147536
+
Gln
TTG
[ENA]
¡û
>W1710512329
FMZI01000003
Alphaproteobacteria
Mameliella alba [FMZI]
421372
421446
+
Gln
TTG
[ENA]
¡û
>W1710513000
FMZV01000004
Alphaproteobacteria
Ruegeria marina [FMZV]
334523
334597
+
Gln
TTG
[ENA]
¡û
>W1710514271
FNAV01000002
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
98320
98246
-
Gln
TTG
[ENA]
¡û
>W1710529331
FNNW01000020
Alphaproteobacteria
Celeribacter indicus [FNNW]
56301
56227
-
Gln
TTG
[ENA]
¡û
>W1710557705
FOLG01000001
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
426787
426861
+
Gln
TTG
[ENA]
¡û
>W1710559638
FOMU01000002
Alphaproteobacteria
Shimia marina [FOMU]
713855
713929
+
Gln
TTG
[ENA]
¡û
>W1710567765
FOSZ01000007
Alphaproteobacteria
Shimia haliotis [FOSZ]
177430
177504
+
Gln
TTG
[ENA]
¡û
>W1710574040
FOXY01000017
Alphaproteobacteria
Donghicola eburneus [FOXY]
7730
7656
-
Gln
TTG
[ENA]
¡û
>W1710577903
FPBD01000006
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
88856
88782
-
Gln
TTG
[ENA]
¡û
>W1710586339
FQXC01000005
Alphaproteobacteria
Marivita hallyeonensis [FQXC]
166065
166139
+
Gln
TTG
[ENA]
¡û
>W1710598302
FTNX01000001
Alphaproteobacteria
Thalassovita mediterranea mediterraneus [FTNX]
796897
796823
-
Gln
TTG
[ENA]
¡û
>W1710606588
FWXX01000014
Alphaproteobacteria
Tropicibacter naphthalenivorans [FWXX]
1591
1517
-
Gln
TTG
[ENA]
¡û
>W1710616710
JFKC01000026
Alphaproteobacteria
Marivita geojedonensis [JFKC]
53864
53938
+
Gln
TTG
[ENA]
¡û
>W1710616721
JFKD01000002
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
384031
384105
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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