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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401146 (98 seq.)
>W1710877368
LMQA01000003
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
242794
242868
+
Arg
CCG
[ENA]
¡û
>W1710877420
LMQC01000001
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
233215
233289
+
Arg
CCG
[ENA]
¡û
>W1710884057
LMWI01000002
Actinomycetota
Micromonospora maris [LMWI]
3239343
3239417
+
Arg
CCG
[ENA]
¡û
>W1711044178
LRMV01000088
Actinomycetota
Micromonospora rifamycinica [LRMV]
23973
23899
-
Arg
CCG
[ENA]
¡û
>W1711184248
LWLS01000061
Actinomycetota
Micromonospora sp. CB01531 [LWLS]
42040
42114
+
Arg
CCG
[ENA]
¡û
>W1711326353
MBFF02000408
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
1431
1357
-
Arg
CCG
[ENA]
¡û
>W1711603503
MOMC01000042
Actinomycetota
Pseudofrankia asymbiotica NRRL B-16386 [MOMC]
78992
79064
+
Arg
CCG
[ENA]
¡û
>W1711603592
MOME01000013
Actinomycetota
Protofrankia sp. BMG5.30 BMG5.30 [MOME]
62914
62986
+
Arg
CCG
[ENA]
¡û
>C000347
CP000481
Actinomycetota
Acidothermus cellulolyticus 11B 11B; ATCC 43068 [CP000481]
677195
677124
-
Arg
CCG
[Ensembl]
¡û
>W131165310
ARBL01000007
Actinomycetota
Catelliglobosispora koreensis DSM 44566 [ARBL]
9139
9065
-
Arg
CCG
[ENA]
¡û
>WENV180025104
FTIL01127407
[FTIL] metagenome; soil
124
198
+
Arg
CCG
[ENA]
¢þ
>WENV180284152
OBID01017993
[OBID] metagenome; sludge
1192
1120
-
Arg
CCG
[ENA]
¢þ
>WENV180690213
OCZS010000739
[OCZS] soil metagenome; soil
2393
2320
-
Arg
CCG
[ENA]
¢þ
>WENV181168518
OEIU01429328
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
89
163
+
Arg
CCG
[ENA]
¢þ
>WENV181295603
OFHI01081298
[OFHI] soil metagenome; Clay
254
180
-
Arg
CCG
[ENA]
¢þ
>WENV181853387
OGWI01003413
[OGWI] freshwater metagenome; freshwater
1776
1704
-
Arg
CCG
[ENA]
¢þ
>W141242274
CAIE01000039
Actinomycetota
Micromonospora lupini str. Lupac 08 [CAIE]
767958
768032
+
Arg
CCG
[ENA]
¡û
>W141259308
CBYP010000042
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
13728
13800
+
Arg
CCG
[ENA]
¡û
>WENV183093295
OLLX01000179
[OLLX] soil metagenome; soil
816
744
-
Arg
CCG
[ENA]
¢þ
>WENV183748986
PPFU01104399
[PPFU] hypolithon metagenome; Antarctic Hypolithon
416
343
-
Arg
CCG
[ENA]
¢þ
>WENV183749200
PPFU01133927
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1396
1323
-
Arg
CCG
[ENA]
¢þ
>WENV170011024
APMI01040038
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
446
520
+
Arg
CCG
[ENA]
¢þ
>WENV170011561
APMI01074392
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
425
497
+
Arg
CCG
[ENA]
¢þ
>WENV170011854
APMI01097156
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1418
1490
+
Arg
CCG
[ENA]
¢þ
>WENV170012380
APMI01165688
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
563
635
+
Arg
CCG
[ENA]
¢þ
>W141452134
JFBT01000005
Actinomycetota
Cryptosporangium arvum DSM 44712 [JFBT]
1528080
1528152
+
Arg
CCG
[ENA]
¡û
>WENV170973841
MTKY01051304
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3880
3808
-
Arg
CCG
[ENA]
¢þ
>WENV170974841
MTKY01077138
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
721
649
-
Arg
CCG
[ENA]
¢þ
>C181162589
CP028158
Actinomycetota
Plantactinospora sp. BC1 [CP028158]
4680259
4680187
-
Arg
CCG
-
¡û
>C181162620
CP028159
Actinomycetota
Plantactinospora sp. BB1 [CP028159]
5349525
5349599
+
Arg
CCG
-
¡û
>W141558010
JHVP01000002
Actinomycetota
Geodermatophilaceae bacterium URHA0031 [JHVP]
81708
81782
+
Arg
CCG
[ENA]
¡û
>W141730426
JNII01000007
Actinomycetota
Geodermatophilaceae bacterium URHB0048 [JNII]
604261
604187
-
Arg
CCG
[ENA]
¡û
>W141730534
JNIK01000016
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
206261
206187
-
Arg
CCG
[ENA]
¡û
>W141758080
JNYJ01000029
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
112663
112735
+
Arg
CCG
[ENA]
¡û
>W09104988
AAOL01000001
Actinomycetota
Acidothermus cellulolyticus 11B [AAOL]
302115
302043
-
Arg
CCG
[ENA]
¡û
>W1910547157
FZNO01000007
Actinomycetota
Blastococcus mobilis DSM 44272 [FZNO]
173862
173934
+
Arg
CCG
[ENA]
¡û
>W1910549469
FZPH01000003
Actinomycetota
Asanoa hainanensis CGMCC 4.5593 [FZPH]
190021
190093
+
Arg
CCG
[ENA]
¡û
>W1910646728
LWUA01000090
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
14496
14568
+
Arg
CCG
[ENA]
¡û
>W1910901028
NGNT01000024
Actinomycetota
Micromonospora echinospora ATCC 15837 [NGNT]
39955
39882
-
Arg
CCG
[ENA]
¡û
>W1911495739
OBQI01000002
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
314832
314904
+
Arg
CCG
[ENA]
¡û
>W1911497420
OCNK01000001
Actinomycetota
Blastococcus haudaquaticus DSM 44270 [OCNK]
227082
227154
+
Arg
CCG
[ENA]
¡û
>W1911675705
QGGF01000319
Actinomycetota
Micromonospora globispora S2901 [QGGF]
11412
11486
+
Arg
CCG
[ENA]
¡û
>W1911766784
QXEC01000035
Actinomycetota
Micromonospora radicis AZ1-13 [QXEC]
38159
38233
+
Arg
CCG
[ENA]
¡û
>W1911814582
QZFT01000039
Actinomycetota
Pseudonocardiaceae bacterium YIM PH 21723 [QZFT]
66215
66143
-
Arg
CCG
[ENA]
¡û
>W1810072258
PEFG01000001
Actinomycetota
Micromonospora sp. CNZ299 [PEFG]
238446
238520
+
Arg
CCG
[ENA]
¡û
>W1810173702
PJNG01000001
Actinomycetota
Micromonospora sp. CNZ309 [PJNG]
3947952
3948024
+
Arg
CCG
[ENA]
¡û
>W1810222154
POQT01000012
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
94304
94376
+
Arg
CCG
[ENA]
¡û
>W1810222219
POQU01000082
Actinomycetota
Blastococcus atacamensis P6 [POQU]
13348
13274
-
Arg
CCG
[ENA]
¡û
>W1810223864
POTX01000085
Actinomycetota
Micromonospora endophytica DSM 45430 [POTX]
13747
13673
-
Arg
CCG
[ENA]
¡û
>W1810223964
POTY01000163
Actinomycetota
Micromonospora craterilacus NA12 [POTY]
8587
8513
-
Arg
CCG
[ENA]
¡û
>W1810224125
POUB01000135
Actinomycetota
Micromonospora deserti 13K206 [POUB]
16371
16299
-
Arg
CCG
[ENA]
¡û
>W1810392093
PYAA01000012
Actinomycetota
Micromonospora noduli LAH08 [PYAA]
29083
29157
+
Arg
CCG
[ENA]
¡û
>W1810392136
PYAB01000010
Actinomycetota
Micromonospora noduli Lupac 07 [PYAB]
184168
184094
-
Arg
CCG
[ENA]
¡û
>W1810392248
PYAD01000049
Actinomycetota
Micromonospora noduli ONO23 [PYAD]
15830
15902
+
Arg
CCG
[ENA]
¡û
>W1810392382
PYAG01000018
Actinomycetota
Micromonospora saelicesensis PSN13 [PYAG]
134071
133997
-
Arg
CCG
[ENA]
¡û
>W1810392527
PYAI01000443
Actinomycetota
Micromonospora saelicesensis PSN01 [PYAI]
15574
15648
+
Arg
CCG
[ENA]
¡û
>W1810392594
PYAK01000003
Actinomycetota
Micromonospora noduli GUI43 [PYAK]
241977
242051
+
Arg
CCG
[ENA]
¡û
>W1810533154
QCZF01000008
Actinomycetota
Blastococcus litoris GP-S2-8 [QCZF]
150158
150086
-
Arg
CCG
[ENA]
¡û
>W1810608059
QGSU01000915
Actinomycetota
Micromonospora globispora S2903 [QGSU]
2671
2597
-
Arg
CCG
[ENA]
¡û
>W1810608178
QGSW01000479
Actinomycetota
Micromonospora sp. S4605 [QGSW]
8186
8258
+
Arg
CCG
[ENA]
¡û
>W1810675362
QKKX01000005
Actinomycetota
Micromonospora sp. MW-13 MW13 [QKKX]
225583
225509
-
Arg
CCG
[ENA]
¡û
>W1810679010
QKNV01000083
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
7936
8008
+
Arg
CCG
[ENA]
¡û
>W1810733439
QOHG01000014
Actinomycetota
Blastococcus sp. TF02A-26 [QOHG]
92881
92953
+
Arg
CCG
[ENA]
¡û
>W1810733546
QOHI01000007
Actinomycetota
Blastococcus sp. TBT05-19 [QOHI]
248197
248270
+
Arg
CCG
[ENA]
¡û
>W1810884461
QUMQ01000001
Actinomycetota
Asanoa ferruginea DSM 44099 [QUMQ]
3721837
3721765
-
Arg
CCG
[ENA]
¡û
>W1511307094
JPMX01000118
Actinomycetota
Modestobacter caceresii KNN45-2b [JPMX]
158137
158209
+
Arg
CCG
[ENA]
¡û
>C11123539
CP002638
Actinomycetota
Micromonospora maris AB-18-032 [CP002638]
5604353
5604427
+
Arg
CCG
[Ensembl]
¡û
>C121016206
FO203431
Actinomycetota
Modestobacter marinus BC501 [FO203431]
4560474
4560548
+
Arg
CCG
[Ensembl]
¡û
>C161109583
LT594323
Actinomycetota
Micromonospora auratinigra DSM 44815 [LT594323]
3904301
3904373
+
Arg
CCG
-
¡û
>W1610027203
AVPL01000019
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
7605
7679
+
Arg
CCG
[ENA]
¡û
>W121010764
AGJN01000034
Actinomycetota
Pseudofrankia saprophytica CN3 [AGJN]
27922
27850
-
Arg
CCG
[ENA]
¡û
>W1610739714
LMQA01000003
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
242794
242868
+
Arg
CCG
[ENA]
¡û
>W1610739766
LMQC01000001
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
233215
233289
+
Arg
CCG
[ENA]
¡û
>W1610745983
LMWI01000002
Actinomycetota
Micromonospora maris [LMWI]
3239343
3239417
+
Arg
CCG
[ENA]
¡û
>W1610885423
LRMV01000088
Actinomycetota
Micromonospora rifamycinica [LRMV]
23973
23899
-
Arg
CCG
[ENA]
¡û
>W1611063196
MBFF01000357
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
1488
1562
+
Arg
CCG
[ENA]
¡û
>W1710023368
AVPL01000019
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
7605
7679
+
Arg
CCG
[ENA]
¡û
>W1710502789
FMCR01000006
Actinomycetota
Micromonospora saelicesensis [FMCR]
234097
234171
+
Arg
CCG
[ENA]
¡û
>W1710502958
FMCV01000001
Actinomycetota
Micromonospora marina [FMCV]
42945
43019
+
Arg
CCG
[ENA]
¡û
>W1710503028
FMCW01000005
Actinomycetota
Micromonospora haikouensis [FMCW]
49473
49547
+
Arg
CCG
[ENA]
¡û
>W1710503083
FMCX01000003
Actinomycetota
Micromonospora mirobrigensis [FMCX]
257767
257839
+
Arg
CCG
[ENA]
¡û
>W1710503616
FMDN01000001
Actinomycetota
Micromonospora halophytica [FMDN]
51784
51856
+
Arg
CCG
[ENA]
¡û
>W1710504100
FMHT01000003
Actinomycetota
Micromonospora nigra [FMHT]
1854128
1854202
+
Arg
CCG
[ENA]
¡û
>W1710504231
FMHV01000002
Actinomycetota
Micromonospora rhizosphaerae [FMHV]
6915806
6915880
+
Arg
CCG
[ENA]
¡û
>W1710504412
FMHY01000002
Actinomycetota
Micromonospora eburnea [FMHY]
6091214
6091288
+
Arg
CCG
[ENA]
¡û
>W1710504469
FMHZ01000002
Actinomycetota
Micromonospora citrea [FMHZ]
4672997
4672925
-
Arg
CCG
[ENA]
¡û
>W1710504574
FMIB01000002
Actinomycetota
Micromonospora chersina [FMIB]
5409286
5409214
-
Arg
CCG
[ENA]
¡û
>W1710504625
FMIC01000002
Actinomycetota
Micromonospora peucetia [FMIC]
3218154
3218080
-
Arg
CCG
[ENA]
¡û
>W1710506097
FMUH01000004
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
171541
171469
-
Arg
CCG
[ENA]
¡û
>W1710514308
FNAW01000001
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
220832
220904
+
Arg
CCG
[ENA]
¡û
>W1710515359
FNBT01000003
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
231462
231534
+
Arg
CCG
[ENA]
¡û
>W1710515979
FNCF01000005
Actinomycetota
Klenkia brasiliensis [FNCF]
151722
151650
-
Arg
CCG
[ENA]
¡û
>W1710524361
FNIR01000004
Actinomycetota
Klenkia soli [FNIR]
151512
151438
-
Arg
CCG
[ENA]
¡û
>W1710530728
FNOZ01000003
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
2665
2593
-
Arg
CCG
[ENA]
¡û
>W1710548970
FOEE01000006
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
223360
223432
+
Arg
CCG
[ENA]
¡û
>W1710558749
FOMD01000001
Actinomycetota
Klenkia taihuensis [FOMD]
1358811
1358739
-
Arg
CCG
[ENA]
¡û
>W1710560139
FOND01000005
Actinomycetota
Blastococcus sp. DSM 46838 [FOND]
84264
84190
-
Arg
CCG
[ENA]
¡û
>W1710592744
FRCS01000001
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
105329
105257
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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