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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401168 (63 seq.)
>C171033169
CP014692
Alphaproteobacteria
Acetobacter aceti TMW2.1153 [CP014692]
2506971
2506897
-
Val
TAC
-
¡û
>C171100658
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
837672
837598
-
Val
TAC
-
¡û
>C171119437
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
1443343
1443269
-
Val
TAC
-
¡û
>W131164877
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
2603071
2603145
+
Val
TAC
[ENA]
¡û
>WENV180694949
OCZS012844734
[OCZS] soil metagenome; soil
162
88
-
Val
TAC
[ENA]
¢þ
>WENV181145550
OEHO01341888
[OEHO] metagenome; unknown
82
153
+
Val
TAC
[ENA]
¢þ
>W141224552
BAIN01000008
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
36462
36536
+
Val
TAC
[ENA]
¡û
>W141224596
BAIO01000044
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
3945
3871
-
Val
TAC
[ENA]
¡û
>W141226104
BAJU01000005
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
100612
100686
+
Val
TAC
[ENA]
¡û
>W141402014
JDTI01000166
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
42639
42565
-
Val
TAC
[ENA]
¡û
>WENV170669480
LAHS01000332
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
36375
36301
-
Val
TAC
[ENA]
¢þ
>C181103415
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
801967
802041
+
Val
TAC
-
¡û
>C191023961
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
2141686
2141760
+
Val
TAC
-
¡û
>C191150988
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
1178703
1178629
-
Val
TAC
-
¡û
>C191166479
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
109299
109225
-
Val
TAC
-
¡û
>C191166538
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
108630
108556
-
Val
TAC
-
¡û
>W1910006523
BAGS01000006
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
43614
43540
-
Val
TAC
[ENA]
¡û
>W1910015205
BDLU01000032
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
129575
129501
-
Val
TAC
[ENA]
¡û
>W1910015251
BDLW01000013
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
315829
315755
-
Val
TAC
[ENA]
¡û
>W1910182362
BJMV01000002
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
273038
273112
+
Val
TAC
[ENA]
¡û
>W1910694745
MDTO01000304
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
13707
13633
-
Val
TAC
[ENA]
¡û
>W1910695650
MDVZ01000178
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
13626
13552
-
Val
TAC
[ENA]
¡û
>W1910871851
NCXK01000003
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
136929
137003
+
Val
TAC
[ENA]
¡û
>W1910872342
NDFO01000005
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
137184
137258
+
Val
TAC
[ENA]
¡û
>W1910872390
NDFP01000005
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
137184
137258
+
Val
TAC
[ENA]
¡û
>W1910929228
NIRT01000001
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
36281
36207
-
Val
TAC
[ENA]
¡û
>W1910971999
NKCY01000001
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
357529
357603
+
Val
TAC
[ENA]
¡û
>W1910990417
NKTX01000002
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
159781
159855
+
Val
TAC
[ENA]
¡û
>W1910990462
NKTY01000001
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
36447
36373
-
Val
TAC
[ENA]
¡û
>W1910990525
NKTZ01000002
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
65418
65344
-
Val
TAC
[ENA]
¡û
>W1910990579
NKUA01000007
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
61484
61410
-
Val
TAC
[ENA]
¡û
>W1910990610
NKUB01000001
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
324287
324361
+
Val
TAC
[ENA]
¡û
>W1910990658
NKUC01000001
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
299206
299280
+
Val
TAC
[ENA]
¡û
>W1911138372
NOXG01000001
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
322330
322404
+
Val
TAC
[ENA]
¡û
>W1911717676
QQBI01000003
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
118358
118284
-
Val
TAC
[ENA]
¡û
>W1810000552
BEWK01000003
Alphaproteobacteria
Acetobacter aceti NBRC 3281 [BEWK]
102538
102612
+
Val
TAC
[ENA]
¡û
>W1810053994
PDEU01000004
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
194855
194929
+
Val
TAC
[ENA]
¡û
>C151006057
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
2201653
2201579
-
Val
TAC
[Ensembl]
¡û
>C11110003
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
1023113
1023039
-
Val
TAC
[Ensembl]
¡û
>W1511431885
JUFX01000240
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
42440
42366
-
Val
TAC
[ENA]
¡û
>W11157685
AFCH01000053
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
135911
135985
+
Val
TAC
[ENA]
¡û
>W11184477
BABW01000749
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
4177
4103
-
Val
TAC
[ENA]
¡û
>W11186772
CADP01000016
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
7860
7786
-
Val
TAC
[ENA]
¡û
>W11186812
CADR01000001
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
28691
28617
-
Val
TAC
[ENA]
¡û
>W11186887
CADS01000009
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
43997
44071
+
Val
TAC
[ENA]
¡û
>W11186932
CADT01000001
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
147895
147969
+
Val
TAC
[ENA]
¡û
>C161105578
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
2055364
2055290
-
Val
TAC
[Ensembl]
¡û
>W1610040673
BALE01000038
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
36227
36153
-
Val
TAC
[ENA]
¡û
>W1610040697
BAMU01000009
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
103586
103660
+
Val
TAC
[ENA]
¡û
>W1610040905
BAMZ01000003
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
37549
37475
-
Val
TAC
[ENA]
¡û
>W1610041153
BANF01000184
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
151
77
-
Val
TAC
[ENA]
¡û
>W1610041282
BANI01000363
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
158
84
-
Val
TAC
[ENA]
¡û
>W1610041296
BANJ01000012
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
159727
159801
+
Val
TAC
[ENA]
¡û
>W1610070876
BCTP01000006
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
86394
86468
+
Val
TAC
[ENA]
¡û
>W1710037871
BALE01000038
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
36227
36153
-
Val
TAC
[ENA]
¡û
>W1710037895
BAMU01000009
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
103586
103660
+
Val
TAC
[ENA]
¡û
>W1710038103
BAMZ01000003
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
37549
37475
-
Val
TAC
[ENA]
¡û
>W1710038351
BANF01000184
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
151
77
-
Val
TAC
[ENA]
¡û
>W1710038480
BANI01000363
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
158
84
-
Val
TAC
[ENA]
¡û
>W1710038494
BANJ01000012
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
159727
159801
+
Val
TAC
[ENA]
¡û
>W1710068198
BCTP01000006
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
86394
86468
+
Val
TAC
[ENA]
¡û
>W1710624673
JOPD01000003
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
43071
42997
-
Val
TAC
[ENA]
¡û
>W1710624868
JOPJ01000001
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
21685
21611
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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