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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401169 (68 seq.)
>W1710989963
LPWU01000129
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
36525
36451
-
Met
CAT
[ENA]
¡û
>W1711257943
LYUD01000099
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
642154
642080
-
Met
CAT
[ENA]
¡û
>W131043771
AMPS01000188
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
33294
33220
-
Met
CAT
[ENA]
¡û
>C171036190
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
755410
755336
-
Met
CAT
-
¡û
>C171036230
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
2359094
2359168
+
Met
CAT
-
¡û
>C171120250
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
97067
97141
+
Met
CAT
-
¡û
>C171120307
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
93478
93552
+
Met
CAT
-
¡û
>C171126406
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
93462
93536
+
Met
CAT
-
¡û
>W141226097
BAJU01000001
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
128147
128073
-
Met
CAT
[ENA]
¡û
>W141428598
JEOA01000002
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
29197
29271
+
Met
CAT
[ENA]
¡û
>WENV170669650
LAHS01001063
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
66874
66800
-
Met
CAT
[ENA]
¢þ
>C181063345
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
1231684
1231610
-
Met
CAT
-
¡û
>C181077159
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
1727497
1727571
+
Met
CAT
-
¡û
>C181088277
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
358750
358824
+
Met
CAT
-
¡û
>C181193676
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
1239758
1239684
-
Met
CAT
-
¡û
>C191002724
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
190808
190734
-
Met
CAT
-
¡û
>W141561184
JHYG01000002
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
213095
213021
-
Met
CAT
[ENA]
¡û
>W1910007912
BDER01000015
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
435626
435552
-
Met
CAT
[ENA]
¡û
>W1910007960
BDES01000011
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
301419
301345
-
Met
CAT
[ENA]
¡û
>W1910008021
BDET01000026
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
62672
62598
-
Met
CAT
[ENA]
¡û
>W1910008068
BDEU01000022
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
301467
301393
-
Met
CAT
[ENA]
¡û
>W1910008122
BDEV01000025
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
301448
301374
-
Met
CAT
[ENA]
¡û
>W1910008177
BDEW01000024
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
316073
315999
-
Met
CAT
[ENA]
¡û
>W1910008227
BDEX01000024
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
63467
63393
-
Met
CAT
[ENA]
¡û
>W1910008284
BDEY01000024
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
316106
316032
-
Met
CAT
[ENA]
¡û
>W1910008332
BDEZ01000008
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
313115
313041
-
Met
CAT
[ENA]
¡û
>W1910182354
BJMV01000001
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
358737
358663
-
Met
CAT
[ENA]
¡û
>C141012370
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
2726865
2726791
-
Met
CAT
[Ensembl]
¡û
>W1910657429
MAPU01000001
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
245108
245034
-
Met
CAT
[ENA]
¡û
>W1910753199
MKHC01000001
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
6914
6988
+
Met
CAT
[ENA]
¡û
>W1910871835
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
124402
124476
+
Met
CAT
[ENA]
¡û
>W1910872321
NDFO01000001
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
330330
330256
-
Met
CAT
[ENA]
¡û
>W1910872375
NDFP01000002
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
330330
330256
-
Met
CAT
[ENA]
¡û
>W1810053973
PDEU01000001
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
358857
358783
-
Met
CAT
[ENA]
¡û
>W1810069716
PEBQ01000144
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
308116
308042
-
Met
CAT
[ENA]
¡û
>C151091095
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
2028376
2028302
-
Met
CAT
[Ensembl]
¡û
>C10100691
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
1195874
1195800
-
Met
CAT
[Ensembl]
¡û
>C10100748
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
1195874
1195800
-
Met
CAT
[Ensembl]
¡û
>C10100805
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
1196885
1196811
-
Met
CAT
[Ensembl]
¡û
>C10100862
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
1195868
1195794
-
Met
CAT
[Ensembl]
¡û
>C10100919
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
1195868
1195794
-
Met
CAT
[Ensembl]
¡û
>C10100976
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
1196885
1196811
-
Met
CAT
[Ensembl]
¡û
>C10101033
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
1196885
1196811
-
Met
CAT
[Ensembl]
¡û
>C10101090
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
1195868
1195794
-
Met
CAT
[Ensembl]
¡û
>W1511271133
JOKL01000039
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
165226
165300
+
Met
CAT
[ENA]
¡û
>W11149307
AEUP01000004
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
112807
112733
-
Met
CAT
[ENA]
¡û
>C161001932
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
1141557
1141483
-
Met
CAT
-
¡û
>C161031479
CP011120
Alphaproteobacteria
Acetobacter oryzifermentans SLV-7 [CP011120]
1284811
1284737
-
Met
CAT
[Ensembl]
¡û
>C161105586
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1558057
1557983
-
Met
CAT
[Ensembl]
¡û
>W1610040805
BAMW01000045
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
90979
90905
-
Met
CAT
[ENA]
¡û
>W1610040847
BAMX01000024
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
149130
149056
-
Met
CAT
[ENA]
¡û
>W1610040918
BAMZ01000014
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
76898
76972
+
Met
CAT
[ENA]
¡û
>W121122960
BACF01000005
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
36525
36451
-
Met
CAT
[ENA]
¡û
>W121122992
BACG01000003
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
99800
99726
-
Met
CAT
[ENA]
¡û
>W121126885
CADO01000139
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
435835
435761
-
Met
CAT
[ENA]
¡û
>W121126928
CADQ01000101
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
313111
313037
-
Met
CAT
[ENA]
¡û
>W1611020415
LYUD01000099
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
642154
642080
-
Met
CAT
[ENA]
¡û
>W1710038003
BAMW01000045
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
90979
90905
-
Met
CAT
[ENA]
¡û
>W1710038045
BAMX01000024
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
149130
149056
-
Met
CAT
[ENA]
¡û
>W1710038116
BAMZ01000014
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
76898
76972
+
Met
CAT
[ENA]
¡û
>W1710624302
JOMN01000013
Alphaproteobacteria
Acetobacter sp. DmW_043 [JOMN]
108123
108049
-
Met
CAT
[ENA]
¡û
>W1710624335
JOMO01000011
Alphaproteobacteria
Acetobacter orientalis [JOMO]
84323
84249
-
Met
CAT
[ENA]
¡û
>W1710624391
JOMP01000011
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
467691
467617
-
Met
CAT
[ENA]
¡û
>W1710624481
JOOY01000061
Alphaproteobacteria
Acetobacter orientalis [JOOY]
136995
136921
-
Met
CAT
[ENA]
¡û
>W1710624553
JOPA01000016
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
135780
135854
+
Met
CAT
[ENA]
¡û
>W1710624681
JOPD01000007
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
104222
104148
-
Met
CAT
[ENA]
¡û
>W1710624879
JOPJ01000006
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
338563
338489
-
Met
CAT
[ENA]
¡û
>W1710624906
JOPK01000003
Alphaproteobacteria
Acetobacter orientalis [JOPK]
134753
134827
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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