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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401210 (51 seq.)
>W1710934479
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
54808
54734
-
Arg
CCT
[ENA]
¡û
>W1710934511
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
251286
251212
-
Arg
CCT
[ENA]
¡û
>W1711147358
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
890074
890000
-
Arg
CCT
[ENA]
¡û
>W1711149067
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
553682
553608
-
Arg
CCT
[ENA]
¡û
>W1711149103
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
587903
587829
-
Arg
CCT
[ENA]
¡û
>W1711149140
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
326161
326087
-
Arg
CCT
[ENA]
¡û
>W1711149177
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1015255
1015181
-
Arg
CCT
[ENA]
¡û
>W1711272431
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
307016
306942
-
Arg
CCT
[ENA]
¡û
>W1711281998
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
424811
424737
-
Arg
CCT
[ENA]
¡û
>W1711282044
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
447315
447241
-
Arg
CCT
[ENA]
¡û
>W1711421600
MHZG01000008
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
18819
18745
-
Arg
CCT
[ENA]
¡û
>W1711625776
MPIY01000002
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
116635
116561
-
Arg
CCT
[ENA]
¡û
>W1711932817
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
743225
743151
-
Arg
CCT
[ENA]
¡û
>W1712077029
NGUO01000010
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
124263
124337
+
Arg
CCT
[ENA]
¡û
>W1712077074
NGUP01000005
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
102572
102646
+
Arg
CCT
[ENA]
¡û
>C171035132
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1033797
1033723
-
Arg
CCT
-
¡û
>C171035170
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1052630
1052556
-
Arg
CCT
-
¡û
>C171035208
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
980676
980602
-
Arg
CCT
-
¡û
>C017399
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
890074
890000
-
Arg
CCT
[Ensembl]
¡û
>WENV180018287
FSYV01000242
[FSYV] metagenome; soil
2169
2243
+
Arg
CCT
[ENA]
¢þ
>WENV180033109
FTKD01402781
[FTKD] metagenome; soil
45918
45992
+
Arg
CCT
[ENA]
¢þ
>WENV180851778
ODKV01207886
[ODKV] human metagenome; G_DNA_Stool
268
194
-
Arg
CCT
[ENA]
¢þ
>WENV181828143
OGUM01062388
[OGUM] human gut metagenome; faeces
364
438
+
Arg
CCT
[ENA]
¢þ
>WENV181992328
OHAQ01040102
[OHAQ] human gut metagenome; faeces
504
578
+
Arg
CCT
[ENA]
¢þ
>C08007621
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
821513
821587
+
Arg
CCT
[Ensembl]
¡û
>WENV182885843
OKSC01031802
[OKSC] human gut metagenome; faeces
133
207
+
Arg
CCT
[ENA]
¢þ
>WENV183086717
OLJF01077634
[OLJF] metagenome; faeces
497
423
-
Arg
CCT
[ENA]
¢þ
>WENV170599277
FUWD010070307
[FUWD] metagenome; unknown
181
107
-
Arg
CCT
[ENA]
¢þ
>WENV170599552
FUWD010079528
[FUWD] metagenome; unknown
76
150
+
Arg
CCT
[ENA]
¢þ
>WENV170617278
FUWD012920043
[FUWD] metagenome; unknown
672
598
-
Arg
CCT
[ENA]
¢þ
>WENV170617279
FUWD012920044
[FUWD] metagenome; unknown
212
138
-
Arg
CCT
[ENA]
¢þ
>WENV170707694
LNAP01029815
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2408
2334
-
Arg
CCT
[ENA]
¢þ
>C181078396
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
926154
926080
-
Arg
CCT
-
¡û
>C181218894
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
816126
816052
-
Arg
CCT
-
¡û
>C181218910
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
657185
657259
+
Arg
CCT
-
¡û
>C181218966
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
774930
774856
-
Arg
CCT
-
¡û
>C181219004
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
623759
623685
-
Arg
CCT
-
¡û
>C181219021
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1071286
1071360
+
Arg
CCT
-
¡û
>C181219069
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1455661
1455587
-
Arg
CCT
-
¡û
>C181219112
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
539491
539417
-
Arg
CCT
-
¡û
>W09106286
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
19082
19008
-
Arg
CCT
[ENA]
¡û
>W09107516
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
772035
771961
-
Arg
CCT
[ENA]
¡û
>W09119208
ACDP01000043
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
303121
303047
-
Arg
CCT
[ENA]
¡û
>C141003810
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
877802
877728
-
Arg
CCT
[Ensembl]
¡û
>W1911490733
OANS01000002
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
316610
316684
+
Arg
CCT
[ENA]
¡û
>C161092378
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1062702
1062776
+
Arg
CCT
[Ensembl]
¡û
>WENV057991
AACY023313913
Marine microbial communities from Global Ocean Sampling (GOS)
323
399
+
Arg
CCT
[ENA]
>WENV058098
AACY023317464
Marine microbial communities from Global Ocean Sampling (GOS)
500
574
+
Arg
CCT
[ENA]
>W1610792010
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
54808
54734
-
Arg
CCT
[ENA]
¡û
>W1610792042
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
251286
251212
-
Arg
CCT
[ENA]
¡û
>W1710586000
FQWU01000002
Betaproteobacteria
Massilia sp. CF038 [FQWU]
1111474
1111548
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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