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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401244 (40 seq.)
>W1711050802
LRRR01000014
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
42871
42945
+
Thr
GGT
[ENA]
¡û
>W1711228852
LXWX01000078
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
200464
200390
-
Thr
GGT
[ENA]
¡û
>W1711385897
MEEU01000001
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
227227
227153
-
Thr
GGT
[ENA]
¡û
>W1711504896
MKUZ01000023
Alphaproteobacteria
Devosia sp. 66-22 [MKUZ]
66735
66661
-
Thr
GGT
[ENA]
¡û
>W1711504935
MKVA01000006
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
350093
350019
-
Thr
GGT
[ENA]
¡û
>W141010042
AHPL01000001
Alphaproteobacteria
Bartonella koehlerae C-29 [AHPL]
54849
54923
+
Thr
GGT
[ENA]
¡û
>WENV170011135
APMI01045669
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4098
4172
+
Thr
GGT
[ENA]
¢þ
>WENV170709718
LNFM01000622
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
80883
80809
-
Thr
GGT
[ENA]
¢þ
>WENV170710493
LNFM01001891
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5530
5604
+
Thr
GGT
[ENA]
¢þ
>WENV170711447
LNFM01005288
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
22550
22476
-
Thr
GGT
[ENA]
¢þ
>WENV170711945
LNFM01008556
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19
93
+
Thr
GGT
[ENA]
¢þ
>WENV170711963
LNFM01008684
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7891
7965
+
Thr
GGT
[ENA]
¢þ
>WENV170713983
LNFM01049399
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2846
2920
+
Thr
GGT
[ENA]
¢þ
>WENV170714178
LNFM01059166
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2329
2403
+
Thr
GGT
[ENA]
¢þ
>WENV170714647
LNFM01091579
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1551
1477
-
Thr
GGT
[ENA]
¢þ
>WENV170714994
LNFM01123431
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19
93
+
Thr
GGT
[ENA]
¢þ
>W141485427
JFZJ01000034
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
16119
16193
+
Thr
GGT
[ENA]
¡û
>C191087713
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
1374789
1374715
-
Thr
GGT
-
¡û
>C191184151
CP040914
Alphaproteobacteria
Mesorhizobium sp. 8 [CP040914]
3778892
3778966
+
Thr
GGT
-
¡û
>W1910501516
FYAO01000010
Alphaproteobacteria
Pannonibacter sp. P2PFMT1 [FYAO]
141341
141415
+
Thr
GGT
[ENA]
¡û
>W1910698335
MEMM01000135
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12 [MEMM]
209
135
-
Thr
GGT
[ENA]
¡û
>W1910743979
MHZT01000003
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_02_FULL_62_130 [MHZT]
206773
206699
-
Thr
GGT
[ENA]
¡û
>W1911219099
NRRJ01000006
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
32332
32258
-
Thr
GGT
[ENA]
¡û
>W1911701547
QNUM01000002
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
568744
568670
-
Thr
GGT
[ENA]
¡û
>W1911747245
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
3542395
3542321
-
Thr
GGT
[ENA]
¡û
>W1810116262
PHOB01000026
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
33968
34042
+
Thr
GGT
[ENA]
¡û
>W1810174032
PJON01000003
Alphaproteobacteria
Tabrizicola aquatica RCRI19 [PJON]
509310
509236
-
Thr
GGT
[ENA]
¡û
>W1810330586
PUIV01000054
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
3229
3303
+
Thr
GGT
[ENA]
¡û
>W1810720651
QNRK01000001
Alphaproteobacteria
Roseiarcus fermentans DSM 24875 [QNRK]
319919
319993
+
Thr
GGT
[ENA]
¡û
>W1810725563
QODK01000008
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
134853
134779
-
Thr
GGT
[ENA]
¡û
>W10118819
ADVE01000005
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
59353
59279
-
Thr
GGT
[ENA]
¡û
>C11119009
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
2210788
2210862
+
Thr
GGT
[Ensembl]
¡û
>W11124991
ADVE01000005
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
59353
59279
-
Thr
GGT
[ENA]
¡û
>W11150238
AEVM01000010
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
72346
72420
+
Thr
GGT
[ENA]
¡û
>C161047957
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
3407942
3408016
+
Thr
GGT
-
¡û
>C131019935
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
1639724
1639650
-
Thr
GGT
[Ensembl]
¡û
>W1610891931
LRRR01000014
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
42871
42945
+
Thr
GGT
[ENA]
¡û
>W1611012769
LXWX01000078
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
200464
200390
-
Thr
GGT
[ENA]
¡û
>WENV080122
AATO01007174
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
467
541
+
Thr
GGT
[ENA]
>W1710571135
FOVR01000002
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
684410
684484
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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