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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401434 (95 seq.)
>W1711299254
MAGB01000054
Bacillota
Limosilactobacillus reuteri [MAGB]
224
297
+
Gln
TTG
[ENA]
¡û
>W1711299283
MAGB01000121
Bacillota
Limosilactobacillus reuteri [MAGB]
13048
12976
-
Gln
TTG
[ENA]
¡û
>W1711329064
MBLQ01000113
Bacillota
Limosilactobacillus reuteri [MBLQ]
27291
27219
-
Gln
TTG
[ENA]
¡û
>W1711329073
MBLQ01000120
Bacillota
Limosilactobacillus reuteri [MBLQ]
255
182
-
Gln
TTG
[ENA]
¡û
>W1711329101
MBLR01000022
Bacillota
Limosilactobacillus reuteri [MBLR]
1124
1197
+
Gln
TTG
[ENA]
¡û
>W1711329127
MBLR01000127
Bacillota
Limosilactobacillus reuteri [MBLR]
27586
27514
-
Gln
TTG
[ENA]
¡û
>W1711433966
MIMP01000011
Bacillota
Limosilactobacillus reuteri [MIMP]
27117
27045
-
Gln
TTG
[ENA]
¡û
>W1711433990
MIMP01000040
Bacillota
Limosilactobacillus reuteri [MIMP]
307
234
-
Gln
TTG
[ENA]
¡û
>W1711434098
MIMS01000011
Bacillota
Limosilactobacillus reuteri [MIMS]
8487
8559
+
Gln
TTG
[ENA]
¡û
>W1711434126
MIMS01000067
Bacillota
Limosilactobacillus reuteri [MIMS]
14037
14110
+
Gln
TTG
[ENA]
¡û
>W1711799138
MWVS01000026
Bacillota
Limosilactobacillus reuteri [MWVS]
9063
9135
+
Gln
TTG
[ENA]
¡û
>W1711799147
MWVS01000059
Bacillota
Limosilactobacillus reuteri [MWVS]
3090
3017
-
Gln
TTG
[ENA]
¡û
>W1712036470
NFHN01000037
Bacillota
Limosilactobacillus reuteri [NFHN]
535
608
+
Gln
TTG
[ENA]
¡û
>W1712036474
NFHN01000050
Bacillota
Limosilactobacillus reuteri [NFHN]
4853
4925
+
Gln
TTG
[ENA]
¡û
>W1712041112
NFKV01000017
Bacillota
Limosilactobacillus reuteri [NFKV]
4853
4925
+
Gln
TTG
[ENA]
¡û
>W1712041121
NFKV01000037
Bacillota
Limosilactobacillus reuteri [NFKV]
535
608
+
Gln
TTG
[ENA]
¡û
>w015023
AAOV01000002
Bacillota
Limosilactobacillus reuteri JCM 1112 [AAOV]
29630
29706
+
Gln
TTG
[ENA]
¡û
>WENV180468035
OBYJ01000226
[OBYJ] human gut metagenome; faeces
4544
4616
+
Gln
TTG
[ENA]
¢þ
>WENV180468319
OBYJ01004599
[OBYJ] human gut metagenome; faeces
594
667
+
Gln
TTG
[ENA]
¢þ
>WENV180712635
ODFT01011114
[ODFT] human metagenome; G_DNA_Posterior fornix
305
378
+
Gln
TTG
[ENA]
¢þ
>WENV181252106
OFFP01003556
[OFFP] mouse gut metagenome; faeces
241
314
+
Gln
TTG
[ENA]
¢þ
>WENV181255502
OFFS01005145
[OFFS] mouse gut metagenome; faeces
73
-1
-
Gln
TTG
[ENA]
¢þ
>WENV181264344
OFGA01000663
[OFGA] mouse gut metagenome; faeces
325
398
+
Gln
TTG
[ENA]
¢þ
>WENV181268286
OFGD01002425
[OFGD] mouse gut metagenome; faeces
7940
7867
-
Gln
TTG
[ENA]
¢þ
>WENV181269377
OFGE01001374
[OFGE] mouse gut metagenome; faeces
21271
21199
-
Gln
TTG
[ENA]
¢þ
>WENV181273240
OFGH01000773
[OFGH] mouse gut metagenome; faeces
21272
21200
-
Gln
TTG
[ENA]
¢þ
>WENV181279738
OFGN01002836
[OFGN] mouse gut metagenome; faeces
7919
7846
-
Gln
TTG
[ENA]
¢þ
>WENV181289356
OFHA01000017
[OFHA] mouse gut metagenome; faeces
4553
4625
+
Gln
TTG
[ENA]
¢þ
>WENV182425943
OIHN01000520
[OIHN] human gut metagenome; human gut
2127
2199
+
Gln
TTG
[ENA]
¢þ
>WENV182480174
OIQW01003308
[OIQW] human gut metagenome; human gut
89
161
+
Gln
TTG
[ENA]
¢þ
>WENV182481395
OIRB01002002
[OIRB] human gut metagenome; human gut
2139
2211
+
Gln
TTG
[ENA]
¢þ
>WENV182487841
OIRX01006879
[OIRX] human gut metagenome; human gut
260
188
-
Gln
TTG
[ENA]
¢þ
>WENV182951472
OKVU01000749
[OKVU] human gut metagenome; human gut
4437
4365
-
Gln
TTG
[ENA]
¢þ
>WENV183018197
OLEY01000704
[OLEY] human gut metagenome; human gut
5648
5576
-
Gln
TTG
[ENA]
¢þ
>WENV170661083
JXWU01099314
[JXWU] soil metagenome; rice field; organic control Plot
300
226
-
Gln
TTG
[ENA]
¢þ
>C181181789
CP029613
Bacillota
Limosilactobacillus reuteri Byun-re-01 [CP029613]
651716
651788
+
Gln
TTG
-
¡û
>C181181848
CP029613
Bacillota
Limosilactobacillus reuteri Byun-re-01 [CP029613]
1396132
1396059
-
Gln
TTG
-
¡û
>C181181932
CP029615
Bacillota
Limosilactobacillus reuteri SKKU-OGDONS-01 [CP029615]
211612
211685
+
Gln
TTG
-
¡û
>C181181965
CP029615
Bacillota
Limosilactobacillus reuteri SKKU-OGDONS-01 [CP029615]
961164
961092
-
Gln
TTG
-
¡û
>C181185261
CP029797
Bacillota
Paraliobacillus zengyii X-1125 [CP029797]
211255
211329
+
Gln
TTG
-
¡û
>C181185268
CP029797
Bacillota
Paraliobacillus zengyii X-1125 [CP029797]
451439
451513
+
Gln
TTG
-
¡û
>C181185288
CP029797
Bacillota
Paraliobacillus zengyii X-1125 [CP029797]
764498
764572
+
Gln
TTG
-
¡û
>C191155389
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
2154914
2154987
+
Gln
TTG
-
¡û
>C191155426
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
1075778
1075706
-
Gln
TTG
-
¡û
>C191155439
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
582382
582309
-
Gln
TTG
-
¡û
>W09127507
ACLB01000019
Bacillota
Limosilactobacillus reuteri MM2-3 [ACLB]
37359
37287
-
Gln
TTG
[ENA]
¡û
>W09127529
ACLB01000081
Bacillota
Limosilactobacillus reuteri MM2-3 [ACLB]
2569
2496
-
Gln
TTG
[ENA]
¡û
>W09128037
ACLL01000013
Bacillota
Limosilactobacillus antri DSM 16041 [ACLL]
44667
44739
+
Gln
TTG
[ENA]
¡û
>W09128086
ACLL01000066
Bacillota
Limosilactobacillus antri DSM 16041 [ACLL]
211
283
+
Gln
TTG
[ENA]
¡û
>C141005297
CP006603
Bacillota
Limosilactobacillus reuteri TD1 [CP006603]
358911
358983
+
Gln
TTG
[Ensembl]
¡û
>C141005353
CP006603
Bacillota
Limosilactobacillus reuteri TD1 [CP006603]
1119569
1119496
-
Gln
TTG
[Ensembl]
¡û
>W1910438129
FVZO01000005
Bacillota
Paraliobacillus ryukyuensis Marseille-P3391 [FVZO]
4658
4584
-
Gln
TTG
[ENA]
¡û
>W1910438153
FVZO01000013
Bacillota
Paraliobacillus ryukyuensis Marseille-P3391 [FVZO]
261449
261375
-
Gln
TTG
[ENA]
¡û
>W1910438160
FVZO01000013
Bacillota
Paraliobacillus ryukyuensis Marseille-P3391 [FVZO]
941
867
-
Gln
TTG
[ENA]
¡û
>W1910902753
NGPB01000025
Bacillota
Limosilactobacillus reuteri 609i [NGPB]
29295
29368
+
Gln
TTG
[ENA]
¡û
>W1910902759
NGPB01000029
Bacillota
Limosilactobacillus reuteri 609i [NGPB]
7677
7749
+
Gln
TTG
[ENA]
¡û
>W1910903007
NGPF01000077
Bacillota
Limosilactobacillus reuteri 601g [NGPF]
7856
7928
+
Gln
TTG
[ENA]
¡û
>W1910904214
NGPY01000009
Bacillota
Limosilactobacillus reuteri 105k [NGPY]
30364
30292
-
Gln
TTG
[ENA]
¡û
>W1910904281
NGPZ01000023
Bacillota
Limosilactobacillus reuteri 105i [NGPZ]
30364
30292
-
Gln
TTG
[ENA]
¡û
>W1910904305
NGPZ01000048
Bacillota
Limosilactobacillus reuteri 105i [NGPZ]
350
277
-
Gln
TTG
[ENA]
¡û
>W1910904475
NGQC01000020
Bacillota
Limosilactobacillus reuteri 103v [NGQC]
9360
9432
+
Gln
TTG
[ENA]
¡û
>W1911569315
PCYS01000005
Bacillota
Lactobacillus sp. UMNPBX18 [PCYS]
40171
40099
-
Gln
TTG
[ENA]
¡û
>W1911569362
PCYS01000249
Bacillota
Lactobacillus sp. UMNPBX18 [PCYS]
215
142
-
Gln
TTG
[ENA]
¡û
>W1911569603
PCYX01000008
Bacillota
Lactobacillus sp. UMNPBX13 [PCYX]
40173
40101
-
Gln
TTG
[ENA]
¡û
>W1911569905
PCZC01000073
Bacillota
Lactobacillus sp. UMNPBX7 [PCZC]
2011
1938
-
Gln
TTG
[ENA]
¡û
>W1911569910
PCZC01000076
Bacillota
Lactobacillus sp. UMNPBX7 [PCZC]
40348
40276
-
Gln
TTG
[ENA]
¡û
>W1810598068
QGHT01000006
Bacillota
Limosilactobacillus reuteri LR10 [QGHT]
61770
61698
-
Gln
TTG
[ENA]
¡û
>W1810598103
QGHT01000048
Bacillota
Limosilactobacillus reuteri LR10 [QGHT]
12272
12345
+
Gln
TTG
[ENA]
¡û
>W1810598228
QGHV01000058
Bacillota
Limosilactobacillus reuteri LR9 [QGHV]
10970
10898
-
Gln
TTG
[ENA]
¡û
>W1810598235
QGHV01000064
Bacillota
Limosilactobacillus reuteri LR9 [QGHV]
12529
12602
+
Gln
TTG
[ENA]
¡û
>W1810598368
QGHX01000134
Bacillota
Limosilactobacillus reuteri LR7 [QGHX]
958
886
-
Gln
TTG
[ENA]
¡û
>W1810598399
QGHX01000247
Bacillota
Limosilactobacillus reuteri LR7 [QGHX]
168
95
-
Gln
TTG
[ENA]
¡û
>W1810720505
QNRI01000003
Bacillota
Paraliobacillus ryukyuensis DSM 15140 [QNRI]
909
835
-
Gln
TTG
[ENA]
¡û
>W1810720527
QNRI01000007
Bacillota
Paraliobacillus ryukyuensis DSM 15140 [QNRI]
152099
152025
-
Gln
TTG
[ENA]
¡û
>W1810720536
QNRI01000009
Bacillota
Paraliobacillus ryukyuensis DSM 15140 [QNRI]
128012
127938
-
Gln
TTG
[ENA]
¡û
>W1810786803
QRDF01000009
Bacillota
Limosilactobacillus reuteri LR CGMCC No.11154 [QRDF]
38206
38134
-
Gln
TTG
[ENA]
¡û
>W1511275002
JOOG01000004
Bacillota
Limosilactobacillus reuteri LTH5448 [JOOG]
33794
33866
+
Gln
TTG
[ENA]
¡û
>W1511275017
JOOG01000018
Bacillota
Limosilactobacillus reuteri LTH5448 [JOOG]
820
747
-
Gln
TTG
[ENA]
¡û
>W1511639248
LDPB01000006
Bacillota
Limosilactobacillus panis DSM 6035 [LDPB]
7875
7947
+
Gln
TTG
[ENA]
¡û
>W1511639263
LDPB01000098
Bacillota
Limosilactobacillus panis DSM 6035 [LDPB]
540
465
-
Gln
TTG
[ENA]
¡û
>C161087508
CP015408
Bacillota
Limosilactobacillus reuteri I49 [CP015408]
2013202
2013274
+
Gln
TTG
-
¡û
>C161087539
CP015408
Bacillota
Limosilactobacillus reuteri I49 [CP015408]
639003
638930
-
Gln
TTG
-
¡û
>W121045226
AICN01000062
Bacillota
Limosilactobacillus gastricus PS3 [AICN]
74476
74404
-
Gln
TTG
[ENA]
¡û
>W1610031070
AYYN01000143
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
2484
2557
+
Gln
TTG
[ENA]
¡û
>W1610104901
CZDA01000091
Bacillota
Limosilactobacillus reuteri [CZDA]
61655
61583
-
Gln
TTG
[ENA]
¡û
>W1610104914
CZDA01000103
Bacillota
Limosilactobacillus reuteri [CZDA]
224
151
-
Gln
TTG
[ENA]
¡û
>W1610122327
CZRP01000009
Bacillota
Gracilibacillus massiliensis Awa-1 [CZRP]
291083
291009
-
Gln
TTG
[ENA]
¡û
>W1610122334
CZRP01000009
Bacillota
Gracilibacillus massiliensis Awa-1 [CZRP]
1008
934
-
Gln
TTG
[ENA]
¡û
>W1610122354
CZRP01000011
Bacillota
Gracilibacillus massiliensis Awa-1 [CZRP]
1600
1674
+
Gln
TTG
[ENA]
¡û
>W1710028022
AYYN01000143
Bacillota
Ligilactobacillus murinus DSM 20452 = NBRC 14221 [AYYN]
2484
2557
+
Gln
TTG
[ENA]
¡û
>W1710107605
CZDA01000091
Bacillota
Limosilactobacillus reuteri [CZDA]
61655
61583
-
Gln
TTG
[ENA]
¡û
>W1710107618
CZDA01000103
Bacillota
Limosilactobacillus reuteri [CZDA]
224
151
-
Gln
TTG
[ENA]
¡û
>W1710123994
CZRP01000009
Bacillota
Gracilibacillus massiliensis Awa-1 [CZRP]
291083
291009
-
Gln
TTG
[ENA]
¡û
>W1710124001
CZRP01000009
Bacillota
Gracilibacillus massiliensis Awa-1 [CZRP]
1008
934
-
Gln
TTG
[ENA]
¡û
>W1710124021
CZRP01000011
Bacillota
Gracilibacillus massiliensis Awa-1 [CZRP]
1600
1674
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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