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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401573 (113 seq.)
>W1711310047
MARH01000028
Bacillota
Clostridium perfringens [MARH]
229
303
+
Glu
TTC
[ENA]
¡û
>W1711310052
MARH01000032
Bacillota
Clostridium perfringens [MARH]
4171
4245
+
Glu
TTC
[ENA]
¡û
>W1711310055
MARH01000032
Bacillota
Clostridium perfringens [MARH]
4423
4497
+
Glu
TTC
[ENA]
¡û
>W1711310058
MARH01000032
Bacillota
Clostridium perfringens [MARH]
4676
4750
+
Glu
TTC
[ENA]
¡û
>W1711310707
MARP01000093
Bacillota
Clostridium perfringens [MARP]
23563
23489
-
Glu
TTC
[ENA]
¡û
>W1711310710
MARP01000093
Bacillota
Clostridium perfringens [MARP]
23311
23237
-
Glu
TTC
[ENA]
¡û
>W1711310713
MARP01000093
Bacillota
Clostridium perfringens [MARP]
23058
22984
-
Glu
TTC
[ENA]
¡û
>W1711310718
MARP01000095
Bacillota
Clostridium perfringens [MARP]
85231
85157
-
Glu
TTC
[ENA]
¡û
>W1711312000
MASG01000028
Bacillota
Clostridium perfringens [MASG]
9963
10037
+
Glu
TTC
[ENA]
¡û
>W1711312003
MASG01000028
Bacillota
Clostridium perfringens [MASG]
10215
10289
+
Glu
TTC
[ENA]
¡û
>W1711312048
MASG01000070
Bacillota
Clostridium perfringens [MASG]
1705
1779
+
Glu
TTC
[ENA]
¡û
>W1711507455
MKXR01000019
Bacillota
Clostridium perfringens [MKXR]
32590
32516
-
Glu
TTC
[ENA]
¡û
>W1711507464
MKXR01000028
Bacillota
Clostridium perfringens [MKXR]
4377
4451
+
Glu
TTC
[ENA]
¡û
>W1711507467
MKXR01000028
Bacillota
Clostridium perfringens [MKXR]
4629
4703
+
Glu
TTC
[ENA]
¡û
>W1712036690
NFHR01000006
Bacillota
Clostridium perfringens [NFHR]
161561
161487
-
Glu
TTC
[ENA]
¡û
>W1712036693
NFHR01000006
Bacillota
Clostridium perfringens [NFHR]
161307
161233
-
Glu
TTC
[ENA]
¡û
>W1712036696
NFHR01000006
Bacillota
Clostridium perfringens [NFHR]
161054
160980
-
Glu
TTC
[ENA]
¡û
>W1712036727
NFHR01000020
Bacillota
Clostridium perfringens [NFHR]
48842
48768
-
Glu
TTC
[ENA]
¡û
>C006497
CP000312
Bacillota
Clostridium perfringens SM101 [CP000312]
665896
665970
+
Glu
TTC
[Ensembl]
¡û
>C006498
CP000312
Bacillota
Clostridium perfringens SM101 [CP000312]
2859484
2859410
-
Glu
TTC
[Ensembl]
¡û
>C006501
CP000312
Bacillota
Clostridium perfringens SM101 [CP000312]
2859232
2859158
-
Glu
TTC
[Ensembl]
¡û
>C006504
CP000312
Bacillota
Clostridium perfringens SM101 [CP000312]
2858979
2858905
-
Glu
TTC
[Ensembl]
¡û
>WENV180411204
OBUY01001952
[OBUY] human gut metagenome; faeces
2
76
+
Glu
TTC
[ENA]
¢þ
>WENV180411235
OBUY01002772
[OBUY] human gut metagenome; faeces
306
232
-
Glu
TTC
[ENA]
¢þ
>WENV180494552
OCAA01000450
[OCAA] human gut metagenome; faeces
37261
37335
+
Glu
TTC
[ENA]
¢þ
>WENV180494922
OCAA01001800
[OCAA] human gut metagenome; faeces
9486
9560
+
Glu
TTC
[ENA]
¢þ
>WENV180557545
OCJW01000221
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
501
575
+
Glu
TTC
[ENA]
¢þ
>WENV180557561
OCJW01000370
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
4036
4110
+
Glu
TTC
[ENA]
¢þ
>WENV180557819
OCJX01000128
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
51938
52012
+
Glu
TTC
[ENA]
¢þ
>WENV180557851
OCJX01000219
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
126
200
+
Glu
TTC
[ENA]
¢þ
>WENV180557926
OCJX01007713
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
60
134
+
Glu
TTC
[ENA]
¢þ
>WENV180559175
OCKB01000232
[OCKB] human gut metagenome; Infant 2 DOL 23 gut
136
62
-
Glu
TTC
[ENA]
¢þ
>W08001766
ABDY01000010
Bacillota
Clostridium perfringens NCTC 8239 [ABDY]
81684
81613
-
Glu
TTC
[ENA]
¡û
>W08001769
ABDY01000010
Bacillota
Clostridium perfringens NCTC 8239 [ABDY]
81432
81361
-
Glu
TTC
[ENA]
¡û
>W08001772
ABDY01000010
Bacillota
Clostridium perfringens NCTC 8239 [ABDY]
81179
81108
-
Glu
TTC
[ENA]
¡û
>W08001793
ABDY01000021
Bacillota
Clostridium perfringens NCTC 8239 [ABDY]
4877
4951
+
Glu
TTC
[ENA]
¡û
>WENV181510629
OGGR01000642
[OGGR] metagenome; Human gut stool
4036
4110
+
Glu
TTC
[ENA]
¢þ
>WENV181559140
OGIZ01000021
[OGIZ] metagenome; Human gut stool
156838
156764
-
Glu
TTC
[ENA]
¢þ
>WENV181562093
OGJE01027025
[OGJE] metagenome; Human gut stool
315
389
+
Glu
TTC
[ENA]
¢þ
>WENV181579859
OGJZ01001634
[OGJZ] metagenome; Human gut stool
4036
4110
+
Glu
TTC
[ENA]
¢þ
>WENV181807194
OGSN01010620
[OGSN] human gut metagenome; fecal sample 7 from infant 8
301
227
-
Glu
TTC
[ENA]
¢þ
>WENV182410970
OIFN01000170
[OIFN] human gut metagenome; stool
4235
4309
+
Glu
TTC
[ENA]
¢þ
>WENV182796553
OJSQ01033269
[OJSQ] human gut metagenome; human gut
285
359
+
Glu
TTC
[ENA]
¢þ
>WENV182799602
OJTV01000221
[OJTV] human gut metagenome; human gut
4035
4109
+
Glu
TTC
[ENA]
¢þ
>WENV182820385
OKAM01000013
[OKAM] human gut metagenome; human gut
21883
21809
-
Glu
TTC
[ENA]
¢þ
>WENV182831083
OKED01001298
[OKED] human gut metagenome; human gut
474
548
+
Glu
TTC
[ENA]
¢þ
>WENV182832907
OKEP01001133
[OKEP] human gut metagenome; human gut
162
236
+
Glu
TTC
[ENA]
¢þ
>WENV182846168
OKJJ01000807
[OKJJ] human gut metagenome; human gut
2
76
+
Glu
TTC
[ENA]
¢þ
>WENV182846171
OKJJ01000807
[OKJJ] human gut metagenome; human gut
257
331
+
Glu
TTC
[ENA]
¢þ
>WENV182944772
OKVJ01001467
[OKVJ] human gut metagenome; human gut
1633
1559
-
Glu
TTC
[ENA]
¢þ
>WENV182944775
OKVJ01001467
[OKVJ] human gut metagenome; human gut
1381
1307
-
Glu
TTC
[ENA]
¢þ
>WENV182944778
OKVJ01001467
[OKVJ] human gut metagenome; human gut
1128
1054
-
Glu
TTC
[ENA]
¢þ
>WENV182965456
OKWS01000202
[OKWS] human gut metagenome; stool
21576
21502
-
Glu
TTC
[ENA]
¢þ
>WENV182965526
OKWS01000630
[OKWS] human gut metagenome; stool
246
172
-
Glu
TTC
[ENA]
¢þ
>WENV183502002
OMGS01024084
[OMGS] human gut metagenome; human gut
308
234
-
Glu
TTC
[ENA]
¢þ
>WENV183596073
OODD01012495
[OODD] human gut metagenome; human gut
681
607
-
Glu
TTC
[ENA]
¢þ
>W1910693907
MDJG01000002
Bacillota
Clostridium perfringens 13/0816-B [MDJG]
50539
50613
+
Glu
TTC
[ENA]
¡û
>W1910693933
MDJG01000010
Bacillota
Clostridium perfringens 13/0816-B [MDJG]
2007026
2006952
-
Glu
TTC
[ENA]
¡û
>W1910693934
MDJG01000013
Bacillota
Clostridium perfringens 13/0816-B [MDJG]
504
430
-
Glu
TTC
[ENA]
¡û
>W1910693937
MDJG01000013
Bacillota
Clostridium perfringens 13/0816-B [MDJG]
250
176
-
Glu
TTC
[ENA]
¡û
>W1910693989
MDJH01000003
Bacillota
Clostridium perfringens 13/0815-C [MDJH]
31835
31761
-
Glu
TTC
[ENA]
¡û
>W1910694067
MDJH01000026
Bacillota
Clostridium perfringens 13/0815-C [MDJH]
193251
193177
-
Glu
TTC
[ENA]
¡û
>W1910694070
MDJH01000026
Bacillota
Clostridium perfringens 13/0815-C [MDJH]
192998
192924
-
Glu
TTC
[ENA]
¡û
>W1910694073
MDJH01000026
Bacillota
Clostridium perfringens 13/0815-C [MDJH]
192745
192671
-
Glu
TTC
[ENA]
¡û
>W1911723183
QRFP01000008
Bacillota
Clostridium perfringens 79385-1 [QRFP]
66723
66649
-
Glu
TTC
[ENA]
¡û
>W1911723217
QRFP01000081
Bacillota
Clostridium perfringens 79385-1 [QRFP]
3983
4057
+
Glu
TTC
[ENA]
¡û
>W1810179445
PJSQ01000002
Bacillota
Clostridium perfringens Pennington [PJSQ]
277
351
+
Glu
TTC
[ENA]
¡û
>W1810179456
PJSQ01000006
Bacillota
Clostridium perfringens Pennington [PJSQ]
50601
50675
+
Glu
TTC
[ENA]
¡û
>W1810179460
PJSQ01000006
Bacillota
Clostridium perfringens Pennington [PJSQ]
51044
51118
+
Glu
TTC
[ENA]
¡û
>W1810179659
PJST01000002
Bacillota
Clostridium perfringens PBD1 [PJST]
203
277
+
Glu
TTC
[ENA]
¡û
>W1810179683
PJST01000005
Bacillota
Clostridium perfringens PBD1 [PJST]
174622
174548
-
Glu
TTC
[ENA]
¡û
>W1810179687
PJST01000005
Bacillota
Clostridium perfringens PBD1 [PJST]
174196
174122
-
Glu
TTC
[ENA]
¡û
>W1810179870
PJSW01000008
Bacillota
Clostridium perfringens NAG-NE1 [PJSW]
8
82
+
Glu
TTC
[ENA]
¡û
>W1810179926
PJSW01000080
Bacillota
Clostridium perfringens NAG-NE1 [PJSW]
161
87
-
Glu
TTC
[ENA]
¡û
>W1810179961
PJSX01000003
Bacillota
Clostridium perfringens K473 [PJSX]
50850
50924
+
Glu
TTC
[ENA]
¡û
>W1810179964
PJSX01000003
Bacillota
Clostridium perfringens K473 [PJSX]
51686
51760
+
Glu
TTC
[ENA]
¡û
>W1810179994
PJSX01000020
Bacillota
Clostridium perfringens K473 [PJSX]
34060
33986
-
Glu
TTC
[ENA]
¡û
>W1810180121
PJSZ01000004
Bacillota
Clostridium perfringens GNP-1 [PJSZ]
4609
4683
+
Glu
TTC
[ENA]
¡û
>W1810180125
PJSZ01000004
Bacillota
Clostridium perfringens GNP-1 [PJSZ]
5080
5154
+
Glu
TTC
[ENA]
¡û
>W1810180136
PJSZ01000010
Bacillota
Clostridium perfringens GNP-1 [PJSZ]
277
351
+
Glu
TTC
[ENA]
¡û
>W1810180388
PJTC01000005
Bacillota
Clostridium perfringens EHE-NE7 [PJTC]
4593
4667
+
Glu
TTC
[ENA]
¡û
>W1810180391
PJTC01000005
Bacillota
Clostridium perfringens EHE-NE7 [PJTC]
4845
4919
+
Glu
TTC
[ENA]
¡û
>W1810180413
PJTC01000009
Bacillota
Clostridium perfringens EHE-NE7 [PJTC]
129657
129583
-
Glu
TTC
[ENA]
¡û
>W1810180553
PJTE01000008
Bacillota
Clostridium perfringens 98.78718-2 [PJTE]
51646
51720
+
Glu
TTC
[ENA]
¡û
>W1810180556
PJTE01000008
Bacillota
Clostridium perfringens 98.78718-2 [PJTE]
51898
51972
+
Glu
TTC
[ENA]
¡û
>W1810180559
PJTE01000008
Bacillota
Clostridium perfringens 98.78718-2 [PJTE]
52151
52225
+
Glu
TTC
[ENA]
¡û
>W1810180580
PJTE01000019
Bacillota
Clostridium perfringens 98.78718-2 [PJTE]
22948
22874
-
Glu
TTC
[ENA]
¡û
>W1810180595
PJTE01000052
Bacillota
Clostridium perfringens 98.78718-2 [PJTE]
32
106
+
Glu
TTC
[ENA]
¡û
>W1810181175
PJTM01000005
Bacillota
Clostridium perfringens SOM-NE35 [PJTM]
5534
5608
+
Glu
TTC
[ENA]
¡û
>W1810181178
PJTM01000005
Bacillota
Clostridium perfringens SOM-NE35 [PJTM]
5786
5860
+
Glu
TTC
[ENA]
¡û
>W1810181181
PJTM01000005
Bacillota
Clostridium perfringens SOM-NE35 [PJTM]
6039
6113
+
Glu
TTC
[ENA]
¡û
>W1810181201
PJTM01000008
Bacillota
Clostridium perfringens SOM-NE35 [PJTM]
434
508
+
Glu
TTC
[ENA]
¡û
>W1810181260
PJTN01000014
Bacillota
Clostridium perfringens 48 [PJTN]
20404
20330
-
Glu
TTC
[ENA]
¡û
>W1810181285
PJTN01000033
Bacillota
Clostridium perfringens 48 [PJTN]
30464
30390
-
Glu
TTC
[ENA]
¡û
>W1810181288
PJTN01000033
Bacillota
Clostridium perfringens 48 [PJTN]
30212
30138
-
Glu
TTC
[ENA]
¡û
>W1810181291
PJTN01000033
Bacillota
Clostridium perfringens 48 [PJTN]
29959
29885
-
Glu
TTC
[ENA]
¡û
>W1810181723
PJUV01000012
Bacillota
Clostridium perfringens SYD-NE41 [PJUV]
2400642
2400567
-
Glu
TTC
[ENA]
¡û
>W1510755178
CYSO01000009
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
541070
541144
+
Glu
TTC
[ENA]
¡û
>W1510755180
CYSO01000011
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1957270
1957196
-
Glu
TTC
[ENA]
¡û
>W1510755183
CYSO01000011
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1957026
1956952
-
Glu
TTC
[ENA]
¡û
>W1510755187
CYSO01000011
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1956662
1956588
-
Glu
TTC
[ENA]
¡û
>C161030515
CP010994
Bacillota
Clostridium perfringens JP838 [CP010994]
785950
786024
+
Glu
TTC
[Ensembl]
¡û
>C161030517
CP010994
Bacillota
Clostridium perfringens JP838 [CP010994]
3490051
3489977
-
Glu
TTC
[Ensembl]
¡û
>C161030520
CP010994
Bacillota
Clostridium perfringens JP838 [CP010994]
3489799
3489725
-
Glu
TTC
[Ensembl]
¡û
>C161030523
CP010994
Bacillota
Clostridium perfringens JP838 [CP010994]
3489546
3489472
-
Glu
TTC
[Ensembl]
¡û
>W1610507120
FLSO01000008
Bacillota
Clostridium mediterraneense Marseille-P2434 [FLSO]
108449
108523
+
Glu
TTC
[ENA]
¡û
>W1610507123
FLSO01000008
Bacillota
Clostridium mediterraneense Marseille-P2434 [FLSO]
108696
108770
+
Glu
TTC
[ENA]
¡û
>W1610507127
FLSO01000008
Bacillota
Clostridium mediterraneense Marseille-P2434 [FLSO]
109052
109126
+
Glu
TTC
[ENA]
¡û
>W1610638965
LIYI01000060
Bacillota
Clostridium perfringens CP4 [LIYI]
176937
176863
-
Glu
TTC
[ENA]
¡û
>W1710499338
FLSO01000008
Bacillota
Clostridium mediterraneense Marseille-P2434 [FLSO]
108449
108523
+
Glu
TTC
[ENA]
¡û
>W1710499341
FLSO01000008
Bacillota
Clostridium mediterraneense Marseille-P2434 [FLSO]
108696
108770
+
Glu
TTC
[ENA]
¡û
>W1710499345
FLSO01000008
Bacillota
Clostridium mediterraneense Marseille-P2434 [FLSO]
109052
109126
+
Glu
TTC
[ENA]
¡û
>W1710774859
LIYI01000060
Bacillota
Clostridium perfringens CP4 [LIYI]
176937
176863
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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