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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401689 (38 seq.)
>W1711487615
MKGE01000011
Bacillota
Limosilactobacillus fermentum [MKGE]
141079
141150
+
Arg
CCG
[ENA]
¡û
>W1712106940
NIWV01000091
Bacillota
Limosilactobacillus fermentum [NIWV]
621
550
-
Arg
CCG
[ENA]
¡û
>W141092472
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
434279
434350
+
Arg
CCG
[ENA]
¡û
>W141094633
AVCT01000091
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
1942
2013
+
Arg
CCG
[ENA]
¡û
>WENV181394328
OFRY01054897
[OFRY] human gut metagenome; human gut
150
221
+
Arg
CCG
[ENA]
¢þ
>WENV181458342
OGEJ01008942
[OGEJ] metagenome; Human gut stool
601
672
+
Arg
CCG
[ENA]
¢þ
>WENV181553175
OGIQ01005465
[OGIQ] metagenome; Human gut stool
739
668
-
Arg
CCG
[ENA]
¢þ
>WENV181556213
OGIU01004877
[OGIU] metagenome; Human gut stool
142
71
-
Arg
CCG
[ENA]
¢þ
>WENV182404044
OIEU01001821
[OIEU] human gut metagenome; human gut
383
312
-
Arg
CCG
[ENA]
¢þ
>WENV182495464
OITA01026260
[OITA] human gut metagenome; human gut
428
357
-
Arg
CCG
[ENA]
¢þ
>WENV182954462
OKWA01001700
[OKWA] human gut metagenome; human gut
6596
6667
+
Arg
CCG
[ENA]
¢þ
>WENV182988062
OLAE01021126
[OLAE] human gut metagenome; human gut
492
421
-
Arg
CCG
[ENA]
¢þ
>WENV183133163
OLOB01031036
[OLOB] human gut metagenome; faeces
1038
1109
+
Arg
CCG
[ENA]
¢þ
>WENV183217242
OLQI01000102
[OLQI] human gut metagenome; faeces
88613
88684
+
Arg
CCG
[ENA]
¢þ
>WENV183307190
OLTD01002713
[OLTD] human gut metagenome; faeces
273
344
+
Arg
CCG
[ENA]
¢þ
>C181004015
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
430541
430612
+
Arg
CCG
-
¡û
>C181226919
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
440190
440261
+
Arg
CCG
-
¡û
>C191134273
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
1000033
999962
-
Arg
CCG
-
¡û
>W141805370
JPKN01000281
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
506
435
-
Arg
CCG
[ENA]
¡û
>W1910374045
FUHY01000028
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
17839
17910
+
Arg
CCG
[ENA]
¡û
>W1910374106
FUHZ01000065
Bacillota
Limosilactobacillus fermentum S6 [FUHZ]
17986
18057
+
Arg
CCG
[ENA]
¡û
>W1910954316
NJPQ01000025
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
4446
4375
-
Arg
CCG
[ENA]
¡û
>W1810090565
PGGE01000001
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
3679
3608
-
Arg
CCG
[ENA]
¡û
>W1810473342
QAHK01000025
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
3728
3657
-
Arg
CCG
[ENA]
¡û
>W1810489180
QAZV01000062
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
3729
3658
-
Arg
CCG
[ENA]
¡û
>W1810811218
QRYA01000039
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
2466
2395
-
Arg
CCG
[ENA]
¡û
>C151084239
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
447079
447150
+
Arg
CCG
-
¡û
>W10103385
ACQG01000056
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
3575
3504
-
Arg
CCG
[ENA]
¡û
>W1510021779
BCAH01000020
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
25108
25034
-
Arg
CCG
[ENA]
¡û
>W1510022559
CBZV010000024
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
24010
24081
+
Arg
CCG
[ENA]
¡û
>W11103541
ACQG01000056
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
3575
3504
-
Arg
CCG
[ENA]
¡û
>W1511443798
JUTH01000140
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
8255
8326
+
Arg
CCG
[ENA]
¡û
>W1511567827
LAIK01000005
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
109359
109288
-
Arg
CCG
[ENA]
¡û
>C161077720
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1480073
1480002
-
Arg
CCG
-
¡û
>W1610036756
AZFN01000001
Bacillota
Limosilactobacillus gastricus DSM 16045 [AZFN]
117234
117307
+
Arg
CCG
[ENA]
¡û
>W1610061811
BCMX01000013
Bacillota
Limosilactobacillus equigenerosi [BCMX]
33771
33698
-
Arg
CCG
[ENA]
¡û
>W1710033795
AZFN01000001
Bacillota
Limosilactobacillus gastricus DSM 16045 [AZFN]
117234
117307
+
Arg
CCG
[ENA]
¡û
>W1710059476
BCMX01000013
Bacillota
Limosilactobacillus equigenerosi [BCMX]
33771
33698
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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