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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401705 (21 seq.)
>W1711628641
MPOI01000011
Myxococcota
Archangium sp. Cb G35 [MPOI]
423820
423892
+
Glu
CTC
[ENA]
¡û
>W1711628642
MPOI01000011
Myxococcota
Archangium sp. Cb G35 [MPOI]
423920
423992
+
Glu
CTC
[ENA]
¡û
>w012161
AAMD01000122
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
16317
16243
-
Glu
CTC
[ENA]
¡û
>WENV180016100
FSUC01000170
[FSUC] metagenome; soil
3359
3287
-
Glu
CTC
[ENA]
¢þ
>WENV180023589
FTIC01022791
[FTIC] metagenome; soil
86
158
+
Glu
CTC
[ENA]
¢þ
>WENV180032480
FTKA01006239
[FTKA] metagenome; soil
183
111
-
Glu
CTC
[ENA]
¢þ
>C191013355
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
3063104
3063032
-
Glu
CTC
-
¡û
>W141695199
JMCB01000013
Myxococcota
Hyalangium minutum [JMCB]
144468
144397
-
Glu
CTC
[ENA]
¡û
>W141695263
JMCC01000067
Myxococcota
Enhygromyxa salina [JMCC]
44381
44452
+
Glu
CTC
[ENA]
¡û
>W141806661
JPMI01000220
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
140723
140651
-
Glu
CTC
[ENA]
¡û
>W141806662
JPMI01000220
Myxococcota
Archangium violaceum Cb vi76 [JPMI]
140622
140550
-
Glu
CTC
[ENA]
¡û
>W1911701590
QNUN01000002
Myxococcota
Corallococcus sp. H22C18031201 [QNUN]
88244
88316
+
Glu
CTC
[ENA]
¡û
>W1810452239
PZOX01000022
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
56137
56209
+
Glu
CTC
[ENA]
¡û
>W1810452240
PZOX01000022
Myxococcota
Vitiosangium sp. GDMCC 1.1324 [PZOX]
56259
56331
+
Glu
CTC
[ENA]
¡û
>W1810884666
QUMU01000002
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
652930
653002
+
Glu
CTC
[ENA]
¡û
>W1810884667
QUMU01000002
Myxococcota
Archangium gephyra DSM 2261 [QUMU]
653030
653102
+
Glu
CTC
[ENA]
¡û
>C151008206
CP006003
Myxococcota
Myxococcus fulvus 124B02 [CP006003]
4191460
4191388
-
Glu
CTC
[Ensembl]
¡û
>C151083576
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
8898017
8898089
+
Glu
CTC
[Ensembl]
¡û
>C151083577
CP011509
Myxococcota
Archangium gephyra DSM 2261 [CP011509]
8898117
8898189
+
Glu
CTC
[Ensembl]
¡û
>C131011695
CP004025
Myxococcota
Myxococcus stipitatus DSM 14675 [CP004025]
3897893
3897821
-
Glu
CTC
[Ensembl]
¡û
>W1710553997
FOIB01000008
Myxococcota
Myxococcus fulvus [FOIB]
487675
487603
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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