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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401850 (49 seq.)
>W1711129975
LUUM01000301
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
756
682
-
Gln
TTG
[ENA]
¡û
>W1711228854
LXWX01000081
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
23613
23687
+
Gln
TTG
[ENA]
¡û
>W1711694764
MSIG01000017
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
72920
72994
+
Gln
TTG
[ENA]
¡û
>C171101469
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
1893711
1893785
+
Gln
TTG
-
¡û
>W131186327
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
1767754
1767680
-
Gln
TTG
[ENA]
¡û
>W131163816
ARAB01000006
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
114812
114738
-
Gln
TTG
[ENA]
¡û
>W131166801
ARCT01000001
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
1096514
1096588
+
Gln
TTG
[ENA]
¡û
>WENV180018120
FSYK01000053
[FSYK] metagenome; soil
743
817
+
Gln
TTG
[ENA]
¢þ
>WENV180032042
FTJU01019587
[FTJU] metagenome; soil
828
754
-
Gln
TTG
[ENA]
¢þ
>WENV180255822
OBEQ010760088
[OBEQ] groundwater metagenome; groundwater
534
460
-
Gln
TTG
[ENA]
¢þ
>WENV180308970
OBJR01378602
[OBJR] soil metagenome; soil
38
112
+
Gln
TTG
[ENA]
¢þ
>WENV180584347
OCOJ01036196
[OCOJ] soil metagenome; soil
260
334
+
Gln
TTG
[ENA]
¢þ
>W08008837
ABLP01000002
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
194682
194756
+
Gln
TTG
[ENA]
¡û
>WENV181166300
OEIU01000064
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
39083
39157
+
Gln
TTG
[ENA]
¢þ
>WENV181167463
OEIU01030080
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
87
161
+
Gln
TTG
[ENA]
¢þ
>WENV181192155
OEPS010437889
[OEPS] soil metagenome; soil
35
109
+
Gln
TTG
[ENA]
¢þ
>W141216052
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
1466804
1466730
-
Gln
TTG
[ENA]
¡û
>WENV183663945
ORJL010328951
[ORJL] groundwater metagenome; groundwater
1061
1135
+
Gln
TTG
[ENA]
¢þ
>WENV183685015
ORMF010789929
[ORMF] groundwater metagenome; groundwater
220
294
+
Gln
TTG
[ENA]
¢þ
>WENV183693757
ORMF012132620
[ORMF] groundwater metagenome; groundwater
339
265
-
Gln
TTG
[ENA]
¢þ
>WENV170004405
AGTN01669891
[AGTN] bioreactor metagenome; poplar biomass
362
288
-
Gln
TTG
[ENA]
¢þ
>WENV170010704
APMI01025775
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3778
3852
+
Gln
TTG
[ENA]
¢þ
>WENV170010706
APMI01025797
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1327
1401
+
Gln
TTG
[ENA]
¢þ
>WENV170011173
APMI01047474
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9
83
+
Gln
TTG
[ENA]
¢þ
>WENV170011932
APMI01104240
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
406
480
+
Gln
TTG
[ENA]
¢þ
>WENV170012303
APMI01149846
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9
83
+
Gln
TTG
[ENA]
¢þ
>WENV170649175
JRHI01008658
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
958
1032
+
Gln
TTG
[ENA]
¢þ
>WENV170659736
JXWR01062160
[JXWR] soil metagenome; rice field; ambient CO2
151
225
+
Gln
TTG
[ENA]
¢þ
>C181089635
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
3899693
3899619
-
Gln
TTG
-
¡û
>C191028888
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
716649
716575
-
Gln
TTG
-
¡û
>C191118877
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
15839
15913
+
Gln
TTG
-
¡û
>W141701375
JMKQ01000004
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
491252
491178
-
Gln
TTG
[ENA]
¡û
>W141730485
JNIJ01000030
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
2307
2381
+
Gln
TTG
[ENA]
¡û
>W141821208
JQNK01000008
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
743709
743635
-
Gln
TTG
[ENA]
¡û
>C09107916
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
2248467
2248393
-
Gln
TTG
[Ensembl]
¡û
>W1911747220
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
747574
747648
+
Gln
TTG
[ENA]
¡û
>W1810068794
PDZR01000008
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
147028
147102
+
Gln
TTG
[ENA]
¡û
>W1810330552
PUIV01000003
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
196409
196483
+
Gln
TTG
[ENA]
¡û
>W1810397180
PYDU01000001
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
6381
6307
-
Gln
TTG
[ENA]
¡û
>W1810884350
QUMO01000001
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
436848
436774
-
Gln
TTG
[ENA]
¡û
>W10118843
ADVE01000062
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
23595
23669
+
Gln
TTG
[ENA]
¡û
>W11125015
ADVE01000062
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
23595
23669
+
Gln
TTG
[ENA]
¡û
>W11150245
AEVM01000014
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
13287
13361
+
Gln
TTG
[ENA]
¡û
>W1610041028
BANB01001044
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
276
202
-
Gln
TTG
[ENA]
¡û
>W121067986
AJTV01000015
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
86890
86816
-
Gln
TTG
[ENA]
¡û
>C131019920
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
2654761
2654835
+
Gln
TTG
[Ensembl]
¡û
>W1610941048
LUUM01000301
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
756
682
-
Gln
TTG
[ENA]
¡û
>W1611012771
LXWX01000081
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
23613
23687
+
Gln
TTG
[ENA]
¡û
>W1710038226
BANB01001044
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
276
202
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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