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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401880 (86 seq.)
>W1711229957
LXZG01000033
Bacillota
Ligilactobacillus salivarius [LXZG]
52415
52342
-
Pseudo
CCG
[ENA]
¡û
>W1711687588
MSCR01000019
Bacillota
Ligilactobacillus salivarius [MSCR]
156190
156117
-
Pseudo
CCG
[ENA]
¡û
>W1711943475
NBDX01000010
Bacillota
Ligilactobacillus salivarius [NBDX]
167998
167925
-
Pseudo
CCG
[ENA]
¡û
>W1711943513
NBDY01000008
Bacillota
Ligilactobacillus salivarius [NBDY]
694814
694741
-
Pseudo
CCG
[ENA]
¡û
>W1711943548
NBDZ01000009
Bacillota
Ligilactobacillus salivarius [NBDZ]
455054
454981
-
Pseudo
CCG
[ENA]
¡û
>W1711943587
NBEA01000015
Bacillota
Ligilactobacillus salivarius [NBEA]
563630
563557
-
Pseudo
CCG
[ENA]
¡û
>W1711943634
NBEB01000052
Bacillota
Ligilactobacillus salivarius [NBEB]
116111
116038
-
Pseudo
CCG
[ENA]
¡û
>W1711943691
NBEC01000052
Bacillota
Ligilactobacillus salivarius [NBEC]
116071
115998
-
Pseudo
CCG
[ENA]
¡û
>W1711943733
NBED01000024
Bacillota
Ligilactobacillus salivarius [NBED]
110147
110074
-
Pseudo
CCG
[ENA]
¡û
>W1711943777
NBEE01000012
Bacillota
Ligilactobacillus salivarius [NBEE]
73446
73373
-
Pseudo
CCG
[ENA]
¡û
>W1711943816
NBEF01000019
Bacillota
Ligilactobacillus salivarius [NBEF]
46878
46805
-
Pseudo
CCG
[ENA]
¡û
>W1711943866
NBEG01000013
Bacillota
Ligilactobacillus salivarius [NBEG]
71135
71062
-
Pseudo
CCG
[ENA]
¡û
>W1711943900
NBEH01000010
Bacillota
Ligilactobacillus salivarius [NBEH]
455092
455019
-
Pseudo
CCG
[ENA]
¡û
>W1711943945
NBEI01000012
Bacillota
Ligilactobacillus salivarius [NBEI]
454921
454848
-
Pseudo
CCG
[ENA]
¡û
>W1711944002
NBEJ01000010
Bacillota
Ligilactobacillus salivarius [NBEJ]
168118
168045
-
Pseudo
CCG
[ENA]
¡û
>W1711944052
NBEK01000011
Bacillota
Ligilactobacillus salivarius [NBEK]
141285
141212
-
Pseudo
CCG
[ENA]
¡û
>W1711944090
NBEL01000009
Bacillota
Ligilactobacillus salivarius [NBEL]
141285
141212
-
Pseudo
CCG
[ENA]
¡û
>W1711944142
NBEM01000011
Bacillota
Ligilactobacillus salivarius [NBEM]
139392
139319
-
Pseudo
CCG
[ENA]
¡û
>W1711944197
NBEN01000008
Bacillota
Ligilactobacillus salivarius [NBEN]
187812
187739
-
Pseudo
CCG
[ENA]
¡û
>W1711944243
NBEO01000020
Bacillota
Ligilactobacillus salivarius [NBEO]
96973
96900
-
Pseudo
CCG
[ENA]
¡û
>W1711944289
NBEP01000070
Bacillota
Ligilactobacillus salivarius [NBEP]
814
887
+
Pseudo
CCG
[ENA]
¡û
>W1711944324
NBEQ01000013
Bacillota
Ligilactobacillus salivarius [NBEQ]
211246
211173
-
Pseudo
CCG
[ENA]
¡û
>W1711944384
NBER01000031
Bacillota
Ligilactobacillus salivarius [NBER]
27850
27777
-
Pseudo
CCG
[ENA]
¡û
>W1711944429
NBES01000025
Bacillota
Ligilactobacillus salivarius [NBES]
71205
71132
-
Pseudo
CCG
[ENA]
¡û
>W1711944473
NBET01000016
Bacillota
Ligilactobacillus salivarius [NBET]
241388
241315
-
Pseudo
CCG
[ENA]
¡û
>W1711944512
NBEU01000008
Bacillota
Ligilactobacillus salivarius [NBEU]
455147
455074
-
Pseudo
CCG
[ENA]
¡û
>W1711944560
NBEV01000024
Bacillota
Ligilactobacillus salivarius [NBEV]
168304
168231
-
Pseudo
CCG
[ENA]
¡û
>W1711944614
NBEW01000043
Bacillota
Ligilactobacillus salivarius [NBEW]
27850
27777
-
Pseudo
CCG
[ENA]
¡û
>W1711944651
NBEX01000048
Bacillota
Ligilactobacillus salivarius [NBEX]
27850
27777
-
Pseudo
CCG
[ENA]
¡û
>W1711944691
NBEY01000046
Bacillota
Ligilactobacillus salivarius [NBEY]
27850
27777
-
Pseudo
CCG
[ENA]
¡û
>W1712035972
NFHF01000002
Bacillota
Ligilactobacillus salivarius [NFHF]
74530
74457
-
Pseudo
CCG
[ENA]
¡û
>W1712036883
NFHV01000002
Bacillota
Ligilactobacillus salivarius [NFHV]
52478
52405
-
Pseudo
CCG
[ENA]
¡û
>W1712041939
NFLK01000005
Bacillota
Ligilactobacillus salivarius [NFLK]
25768
25695
-
Pseudo
CCG
[ENA]
¡û
>C171057137
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
1107989
1108062
+
Arg
CCG
-
¡û
>C171113760
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
662376
662449
+
Arg
CCG
-
¡û
>C171129046
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
273331
273258
-
Arg
CCG
-
¡û
>C012731
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
1203071
1203000
-
Arg
CCG
[Ensembl]
¡û
>WENV180341954
OBLI01306533
[OBLI] pig gut metagenome; faeces
162
235
+
Arg
CCG
[ENA]
¢þ
>W141256112
CBVR010000003
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
39298
39371
+
Pseudo
CCG
[ENA]
¡û
>C182000145
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
320057
319984
-
Arg
CCG
-
¡û
>W09123166
ACGT01000004
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
101511
101438
-
Arg
CCG
[ENA]
¡û
>W1920000322
LXYX01000203
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
317
244
-
Arg
CCG
[ENA]
¡û
>W1920000323
LXYY01000005
Bacillota
Ligilactobacillus salivarius KLW009 [LXYY]
910
983
+
Arg
CCG
[ENA]
¡û
>W1920000324
LXYZ01000162
Bacillota
Ligilactobacillus salivarius KLW008 [LXYZ]
902
975
+
Arg
CCG
[ENA]
¡û
>W1920000325
LXZA01000056
Bacillota
Ligilactobacillus salivarius KLW007 [LXZA]
6225
6152
-
Arg
CCG
[ENA]
¡û
>W1920000326
LXZB01000052
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
3873
3946
+
Arg
CCG
[ENA]
¡û
>W1920000327
LXZC01000003
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
910
983
+
Arg
CCG
[ENA]
¡û
>W1920000328
LXZD01000174
Bacillota
Ligilactobacillus salivarius KLW004 [LXZD]
910
983
+
Arg
CCG
[ENA]
¡û
>W1920000329
LXZE01000165
Bacillota
Ligilactobacillus salivarius KLW003 [LXZE]
25834
25761
-
Arg
CCG
[ENA]
¡û
>W1920000330
LXZF01000099
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
910
983
+
Arg
CCG
[ENA]
¡û
>W1920000331
LXZH01000039
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
902
975
+
Arg
CCG
[ENA]
¡û
>W1920000332
LXZJ01000111
Bacillota
Ligilactobacillus salivarius KLF005 [LXZJ]
3865
3938
+
Arg
CCG
[ENA]
¡û
>W1920000333
LXZK01000064
Bacillota
Ligilactobacillus salivarius KLF004 [LXZK]
6225
6152
-
Arg
CCG
[ENA]
¡û
>W1920000334
LXZL01000079
Bacillota
Ligilactobacillus salivarius KLF003 [LXZL]
6231
6158
-
Arg
CCG
[ENA]
¡û
>W1920000335
LXZM01000098
Bacillota
Ligilactobacillus salivarius KLF002 [LXZM]
3873
3946
+
Arg
CCG
[ENA]
¡û
>W1920000336
LXZO01000089
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
22868
22941
+
Arg
CCG
[ENA]
¡û
>W1920000337
LXZP01000020
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
22868
22941
+
Arg
CCG
[ENA]
¡û
>W1920000338
LXZQ01000030
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
22868
22941
+
Arg
CCG
[ENA]
¡û
>W1920000339
LXZR01000046
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
22868
22941
+
Arg
CCG
[ENA]
¡û
>W1920000340
LXZS01000025
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
22868
22941
+
Arg
CCG
[ENA]
¡û
>W1920000341
LXZT01000028
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
22868
22941
+
Arg
CCG
[ENA]
¡û
>W1920000615
NDYW01000001
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
192378
192305
-
Arg
CCG
[ENA]
¡û
>W1920001000
PCZA01000005
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
56037
56110
+
Arg
CCG
[ENA]
¡û
>W1920001002
PCZH01000002
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
73640
73567
-
Arg
CCG
[ENA]
¡û
>W1820000031
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
534111
534184
+
Arg
CCG
[ENA]
¡û
>W1820000102
PKGN01000012
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
55925
55998
+
Arg
CCG
[ENA]
¡û
>W1820000223
QAGU01000002
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
141352
141279
-
Arg
CCG
[ENA]
¡û
>W1820000224
QAGV01000002
Bacillota
Ligilactobacillus salivarius DS11_12 [QAGV]
141352
141279
-
Arg
CCG
[ENA]
¡û
>W1820000243
QAZF01000002
Bacillota
Ligilactobacillus salivarius DS3_12 [QAZF]
141352
141279
-
Arg
CCG
[ENA]
¡û
>W1820000244
QAZG01000002
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
140713
140640
-
Arg
CCG
[ENA]
¡û
>W1820000300
QFAS01000005
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
650796
650723
-
Arg
CCG
[ENA]
¡û
>W1820000509
QRMK01000006
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
82584
82657
+
Arg
CCG
[ENA]
¡û
>W1820000550
QSLH01000002
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
92874
92947
+
Arg
CCG
[ENA]
¡û
>W1820000555
QSTB01000002
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
82425
82498
+
Arg
CCG
[ENA]
¡û
>C151030962
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
1170424
1170351
-
Arg
CCG
[Ensembl]
¡û
>C151082341
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
1160787
1160714
-
Arg
CCG
[Ensembl]
¡û
>W10124287
AEBA01000136
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
27790
27717
-
Pseudo
CCG
[ENA]
¡û
>C10109076
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
1203706
1203633
-
Arg
CCG
[Ensembl]
¡û
>W1511441066
JUQA01000111
Bacillota
Ligilactobacillus salivarius 866_LSAL [JUQA]
26876
26949
+
Arg
CCG
[ENA]
¡û
>W1511443802
JUTI01000009
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
861
934
+
Arg
CCG
[ENA]
¡û
>W1511448798
JVAF01000048
Bacillota
Ligilactobacillus salivarius 609_LSAL [JVAF]
90884
90957
+
Arg
CCG
[ENA]
¡û
>W11131174
AEBA01000136
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
27790
27717
-
Arg
CCG
[ENA]
¡û
>W11167219
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
1631924
1631997
+
Arg
CCG
[ENA]
¡û
>W11168588
AFOI01000002
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
679451
679524
+
Arg
CCG
[ENA]
¡û
>W121045160
AICL01000005
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
74145
74072
-
Arg
CCG
[ENA]
¡û
>W1610031399
AYYT01000002
Bacillota
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 [AYYT]
140661
140588
-
Pseudo
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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