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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401884 (34 seq.)
>W1711713212
MTCW01000005
Gammaproteobacteria
Yersinia enterocolitica [MTCW]
3234
3160
-
Gly
TCC
[ENA]
¡û
>W1711797410
MWTJ01000098
Gammaproteobacteria
Yersinia frederiksenii [MWTJ]
183
257
+
Gly
TCC
[ENA]
¡û
>W1711956081
NBTD01000001
Gammaproteobacteria
Yersinia enterocolitica [NBTD]
1751928
1751854
-
Gly
TCC
[ENA]
¡û
>W1711956168
NBTE01000004
Gammaproteobacteria
Yersinia enterocolitica [NBTE]
28555
28629
+
Gly
TCC
[ENA]
¡û
>W1711956203
NBTF01000004
Gammaproteobacteria
Yersinia enterocolitica [NBTF]
461593
461519
-
Gly
TCC
[ENA]
¡û
>W1712019623
NEYR01000012
Gammaproteobacteria
Morganella morganii subsp. morganii [NEYR]
119657
119583
-
Gly
TCC
[ENA]
¡û
>C027374
AM286415
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica 8081 [AM286415]
2002864
2002938
+
Gly
TCC
[Ensembl]
¡û
>W141024477
AKKR01000002
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica WA-314 [AKKR]
2680
2606
-
Gly
TCC
[ENA]
¡û
>WENV181533479
OGHR01001285
[OGHR] metagenome; Human gut stool
1961
1887
-
Gly
TCC
[ENA]
¢þ
>C181082931
CP023505
Gammaproteobacteria
Morganella morganii FDAARGOS_365 [CP023505]
1892719
1892793
+
Gly
TCC
-
¡û
>C181217535
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
2356480
2356554
+
Gly
TCC
-
¡û
>C191087324
CP032295
Gammaproteobacteria
Morganella morganii DG56-16 [CP032295]
2312678
2312752
+
Gly
TCC
-
¡û
>C191132894
CP034944
Gammaproteobacteria
Morganella morganii subsp. morganii ATCC 25830 [CP034944]
2300330
2300404
+
Gly
TCC
-
¡û
>C191221508
LR590469
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica NCTC12982 [LR590469]
1300018
1299944
-
Gly
TCC
-
¡û
>W141801164
JPDU01000003
Gammaproteobacteria
Yersinia enterocolitica [JPDU]
855242
855168
-
Gly
TCC
[ENA]
¡û
>W141801219
JPDV01000006
Gammaproteobacteria
Yersinia enterocolitica [JPDV]
789843
789917
+
Gly
TCC
[ENA]
¡û
>W141801239
JPDV01000006
Gammaproteobacteria
Yersinia enterocolitica [JPDV]
779175
779101
-
Gly
TCC
[ENA]
¡û
>W1910667407
MCKE01000001
Gammaproteobacteria
Morganella morganii HE-MDREc28 [MCKE]
2009548
2009622
+
Gly
TCC
[ENA]
¡û
>W1911397988
NWMR01000104
Gammaproteobacteria
Yersinia enterocolitica IP39285 [NWMR]
439
513
+
Gly
TCC
[ENA]
¡û
>C151050045
CP009367
Gammaproteobacteria
Yersinia enterocolitica WA [CP009367]
1309687
1309761
+
Gly
TCC
[Ensembl]
¡û
>W1510139179
CGBA01000067
Gammaproteobacteria
Yersinia enterocolitica SZ375/04 [CGBA]
4153
4079
-
Gly
TCC
[ENA]
¡û
>W1510458578
CPYO01000058
Gammaproteobacteria
Yersinia enterocolitica Y286 [CPYO]
421
495
+
Gly
TCC
[ENA]
¡û
>W1510459453
CPZF01000001
Gammaproteobacteria
Yersinia enterocolitica IP27818 [CPZF]
888992
889066
+
Gly
TCC
[ENA]
¡û
>W1510459798
CPZL01000030
Gammaproteobacteria
Yersinia enterocolitica SZ5108/01 [CPZL]
51087
51013
-
Gly
TCC
[ENA]
¡û
>W1510459874
CPZM01000087
Gammaproteobacteria
Yersinia enterocolitica 209-36/84 [CPZM]
2526
2452
-
Gly
TCC
[ENA]
¡û
>W1510461033
CQAJ01000021
Gammaproteobacteria
Yersinia enterocolitica ERL053435 [CQAJ]
1317
1391
+
Gly
TCC
[ENA]
¡û
>W1510463869
CQCF01000067
Gammaproteobacteria
Yersinia enterocolitica SZ506/04 [CQCF]
4685
4611
-
Gly
TCC
[ENA]
¡û
>W1510464699
CQCV01000052
Gammaproteobacteria
Yersinia enterocolitica WA [CQCV]
434
508
+
Gly
TCC
[ENA]
¡û
>W1510668420
CWIY01000055
Gammaproteobacteria
Yersinia enterocolitica E701 [CWIY]
8000
8074
+
Gly
TCC
[ENA]
¡û
>W1510668493
CWIZ01000082
Gammaproteobacteria
Yersinia enterocolitica E736 [CWIZ]
2584
2510
-
Gly
TCC
[ENA]
¡û
>W1511565708
LAGC01000005
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
13121
13195
+
Gly
TCC
[ENA]
¡û
>C161022381
CP009846
Gammaproteobacteria
Yersinia enterocolitica 8081 [CP009846]
1332307
1332381
+
Gly
TCC
[Ensembl]
¡û
>W1610077490
BCZM01000043
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica NBRC 105693 [BCZM]
8524
8598
+
Gly
TCC
[ENA]
¡û
>W1710075128
BCZM01000043
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica NBRC 105693 [BCZM]
8524
8598
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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