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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.40197 (16 seq.)
>W131164503
ARAV01000003
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
218068
217980
-
Ser
GGA
[ENA]
¡û
>WENV181212733
OFBT01001927
[OFBT] metagenome; hydrothermal vent
403
315
-
Ser
GGA
[ENA]
¢þ
>WENV170683992
LFRM01014004
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
35
123
+
Ser
GGA
[ENA]
¢þ
>WENV170685564
LFRM01098435
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
611
697
+
Ser
GGA
[ENA]
¢þ
>C181039057
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
124323
124237
-
Ser
GGA
-
¡û
>C181143912
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
149407
149319
-
Ser
GGA
-
¡û
>C181225906
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
250407
250495
+
Ser
GGA
-
¡û
>C141002634
CP003924
Actinomycetota
Corynebacterium maris DSM 45190 [CP003924]
274851
274763
-
Ser
GGA
[Ensembl]
¡û
>W1911243350
NSGK01000013
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
26748
26836
+
Ser
GGA
[ENA]
¡û
>W1911243554
NSGO01000007
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
121300
121388
+
Ser
GGA
[ENA]
¡û
>W1911243577
NSGP01000001
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
226051
226139
+
Ser
GGA
[ENA]
¡û
>W1911630694
PTJO01000006
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
232334
232246
-
Ser
GGA
[ENA]
¡û
>C151007297
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
178968
178882
-
Ser
GGA
[Ensembl]
¡û
>C151034739
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
193100
193012
-
Ser
GGA
[Ensembl]
¡û
>W1610069809
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
84549
84635
+
Ser
GGA
[ENA]
¡û
>W1710067182
BCSU01000008
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
84549
84635
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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