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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402043 (50 seq.)
>W1711634982
MPUJ01000002
Gammaproteobacteria
Pectobacterium actinidiae subsp. actinidiae [MPUJ]
235849
235775
-
Gln
TTG
[ENA]
¡û
>W1711659108
MQRH01000001
Gammaproteobacteria
Serratia fonticola [MQRH]
208011
207937
-
Gln
TTG
[ENA]
¡û
>W1711659109
MQRH01000001
Gammaproteobacteria
Serratia fonticola [MQRH]
207895
207821
-
Gln
TTG
[ENA]
¡û
>W131110893
APLA01000003
Gammaproteobacteria
Serratia sp. S4 [APLA]
1296488
1296414
-
Gln
TTG
[ENA]
¡û
>W131110894
APLA01000003
Gammaproteobacteria
Serratia sp. S4 [APLA]
1296366
1296292
-
Gln
TTG
[ENA]
¡û
>w019916
AAUN01000018
Gammaproteobacteria
Serratia proteamaculans 568 [AAUN]
102054
101983
-
Gln
TTG
[ENA]
¡û
>w019915
AAUN01000018
Gammaproteobacteria
Serratia proteamaculans 568 [AAUN]
102176
102105
-
Gln
TTG
[ENA]
¡û
>WENV180289280
OBIR01000666
[OBIR] human gut metagenome; Skin biopsy
1492
1566
+
Gln
TTG
[ENA]
¢þ
>W141188361
AYMQ01000102
Gammaproteobacteria
Serratia sp. H1w [AYMQ]
33718
33644
-
Gln
TTG
[ENA]
¡û
>W141188362
AYMQ01000102
Gammaproteobacteria
Serratia sp. H1w [AYMQ]
33603
33529
-
Gln
TTG
[ENA]
¡û
>W141188363
AYMQ01000102
Gammaproteobacteria
Serratia sp. H1w [AYMQ]
33487
33413
-
Gln
TTG
[ENA]
¡û
>W141196082
AYUR01000006
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001697 [AYUR]
81984
82060
+
Gln
TTG
[ENA]
¡û
>WENV183636658
OOKJ01000865
[OOKJ] human gut metagenome; Material from the bottom lip
246
172
-
Gln
TTG
[ENA]
¢þ
>W141427273
JENG01000001
Gammaproteobacteria
Pectobacterium parmentieri CFIA1002 [JENG]
574663
574737
+
Gln
TTG
[ENA]
¡û
>C181105042
CP024780
Gammaproteobacteria
Pectobacterium brasiliense BZA12 [CP024780]
1854794
1854868
+
Gln
TTG
-
¡û
>C181106368
CP024842
Gammaproteobacteria
Pectobacterium versatile 3-2 [CP024842]
1520979
1520905
-
Gln
TTG
-
¡û
>C191048959
CP026977
Gammaproteobacteria
Pectobacterium parmentieri IFB5408 [CP026977]
3346579
3346653
+
Gln
TTG
-
¡û
>C191049420
CP026985
Gammaproteobacteria
Pectobacterium parmentieri IFB5619 [CP026985]
3177930
3178004
+
Gln
TTG
-
¡û
>C191101716
CP033162
Gammaproteobacteria
Serratia sp. P2ACOL2 [CP033162]
1037669
1037595
-
Gln
TTG
-
¡û
>C191212583
LR134494
Gammaproteobacteria
Serratia quinivorans NCTC13188 [LR134494]
1263281
1263207
-
Gln
TTG
-
¡û
>C191212584
LR134494
Gammaproteobacteria
Serratia quinivorans NCTC13188 [LR134494]
1263159
1263085
-
Gln
TTG
-
¡û
>W09134635
ACUM01000048
Gammaproteobacteria
Pectobacterium parmentieri WPP163 [ACUM]
5907
5983
+
Gln
TTG
[ENA]
¡û
>W141809987
JPSM01000022
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense [JPSM]
1087710
1087784
+
Gln
TTG
[ENA]
¡û
>W141822014
JQOF01000009
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum [JQOF]
91582
91656
+
Gln
TTG
[ENA]
¡û
>W141822076
JQOG01000001
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum [JQOG]
64950
64876
-
Gln
TTG
[ENA]
¡û
>W1910803079
MTAM01000004
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum S6-2 [MTAM]
115178
115104
-
Gln
TTG
[ENA]
¡û
>W1910803196
MTAO01000003
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum Q142 [MTAO]
172193
172267
+
Gln
TTG
[ENA]
¡û
>W1910803340
MTAQ01000004
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum S6 [MTAQ]
115172
115098
-
Gln
TTG
[ENA]
¡û
>W1910869893
NCQL01000058
Gammaproteobacteria
Pectobacterium carotovorum BF45 [NCQL]
119444
119518
+
Gln
TTG
[ENA]
¡û
>W1911410190
NWTM01000001
Gammaproteobacteria
Pectobacterium zantedeschiae 9M [NWTM]
2133631
2133705
+
Gln
TTG
[ENA]
¡û
>W1911575589
PDIL01000003
Gammaproteobacteria
Escherichia sp. E1130 [PDIL]
115188
115113
-
Gln
TTG
[ENA]
¡û
>W1911581150
PESL01000005
Gammaproteobacteria
Pectobacterium zantedeschiae 2M [PESL]
120223
120297
+
Gln
TTG
[ENA]
¡û
>W1911581171
PESL01000008
Gammaproteobacteria
Pectobacterium zantedeschiae 2M [PESL]
490486
490560
+
Gln
TTG
[ENA]
¡û
>W1911698530
QNRY01000001
Gammaproteobacteria
Brenneria salicis ATCC 15712 = DSM 30166 [QNRY]
86404
86478
+
Gln
TTG
[ENA]
¡û
>W1810064950
PDVV01000003
Gammaproteobacteria
Pectobacterium versatile F018 [PDVV]
335716
335790
+
Gln
TTG
[ENA]
¡û
>W1810065204
PDVZ01000001
Gammaproteobacteria
Pectobacterium versatile PB70 [PDVZ]
1268879
1268953
+
Gln
TTG
[ENA]
¡û
>W1810084418
PESE01000005
Gammaproteobacteria
Serratia plymuthica 4Rx5 [PESE]
380161
380087
-
Gln
TTG
[ENA]
¡û
>W1810160242
PJDM01000032
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense F152 [PJDM]
15181
15107
-
Gln
TTG
[ENA]
¡û
>W1810423264
PYSO01000007
Gammaproteobacteria
Pectobacterium punjabense SS95 [PYSO]
39783
39857
+
Gln
TTG
[ENA]
¡û
>W1810532697
QCYZ01000001
Gammaproteobacteria
Serratia liquefaciens JL03 [QCYZ]
2860637
2860711
+
Gln
TTG
[ENA]
¡û
>W1810573317
QEKR01000001
Gammaproteobacteria
Pectobacterium versatile WS2152 [QEKR]
547580
547654
+
Gln
TTG
[ENA]
¡û
>W1810580096
QESX01000007
Gammaproteobacteria
Pectobacterium polaris SS28 [QESX]
327998
327924
-
Gln
TTG
[ENA]
¡û
>W1810580165
QESY01000046
Gammaproteobacteria
Pectobacterium atrosepticum SS26 [QESY]
6461
6387
-
Gln
TTG
[ENA]
¡û
>W1810627551
QHMC01000012
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum ATCC 39048 [QHMC]
64381
64455
+
Gln
TTG
[ENA]
¡û
>C151056872
CP009678
Gammaproteobacteria
Pectobacterium odoriferum BC S7 [CP009678]
1423973
1423899
-
Gln
TTG
[Ensembl]
¡û
>W1511389823
JSXC01000024
Gammaproteobacteria
Pectobacterium fontis M022 [JSXC]
66965
66891
-
Gln
TTG
[ENA]
¡û
>W1511436121
JUJN01000007
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC D65 [JUJN]
175410
175336
-
Gln
TTG
[ENA]
¡û
>W1511436309
JUJQ01000002
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum YC T39 [JUJQ]
385237
385163
-
Gln
TTG
[ENA]
¡û
>W1511436458
JUJS01000002
Gammaproteobacteria
Pectobacterium carotovorum subsp. carotovorum BC T5 [JUJS]
1119173
1119099
-
Gln
TTG
[ENA]
¡û
>W1511644944
LDYH01000005
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium smonpas0031082 [LDYH]
332247
332321
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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