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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402234 (28 seq.)
>W1711178876
LWHC01000092
Cyanobacteriota
Cyanobacterium sp. IPPAS B-1200 [LWHC]
68049
68120
+
Val
TAC
[ENA]
¡û
>w021625
AAVU01000014
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
54242
54316
+
Val
TAC
[ENA]
¡û
>W141004300
AFXD01000042
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
28645
28716
+
Val
TAC
[ENA]
¡û
>W141038333
ALVO01000007
Cyanobacteriota
Geminocystis herdmanii PCC 6308 [ALVO]
872718
872647
-
Val
TAC
[ENA]
¡û
>W141038409
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
3968287
3968358
+
Val
TAC
[ENA]
¡û
>W141091931
AUZM01000008
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
110385
110456
+
Val
TAC
[ENA]
¡û
>W141240116
CAFN01000024
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
25535
25464
-
Val
TAC
[ENA]
¡û
>WENV170233893
CEQJ01075728
[CEQJ] marine metagenome genome assembly TARA_076_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2939
2868
-
Val
TAC
[ENA]
¢þ
>WENV170291607
CESA01145202
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
21279
21208
-
Val
TAC
[ENA]
¢þ
>WENV170300540
CESG01133310
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2567
2638
+
Val
TAC
[ENA]
¢þ
>WENV170822443
MDSY01040033
[MDSY] marine metagenome; seawater
105516
105445
-
Val
TAC
[ENA]
¢þ
>W09113170
ABYK01000033
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
44184
44255
+
Val
TAC
[ENA]
¡û
>WENV170982999
MWVV01002364
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1681
1610
-
Val
TAC
[ENA]
¢þ
>W09134559
ACSK01001652
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
679
750
+
Val
TAC
[ENA]
¡û
>WENV170991229
MWWA01140235
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
357
286
-
Val
TAC
[ENA]
¢þ
>WENV170994641
MWWE01021075
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
338
267
-
Val
TAC
[ENA]
¢þ
>WENV170997262
MWWG01068129
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
467
396
-
Val
TAC
[ENA]
¢þ
>C181108408
CP024912
Cyanobacteriota
Cyanobacterium sp. HL-69 [CP024912]
791157
791086
-
Val
TAC
-
¡û
>C181169659
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
1833792
1833863
+
Val
TAC
-
¡û
>W1911638420
PVWN01000047
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
746
817
+
Val
TAC
[ENA]
¡û
>W10111328
ADDH01000022
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
23356
23427
+
Val
TAC
[ENA]
¡û
>C10114719
CP001842
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa isolate ALOHA [CP001842]
955202
955131
-
Val
TAC
[Ensembl]
¡û
>W11114271
ADDH01000022
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
23356
23427
+
Val
TAC
[ENA]
¡û
>W1511582897
LATL02000087
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
13091
13162
+
Val
TAC
[ENA]
¡û
>W1511585675
LAYT01000234
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
24433
24362
-
Val
TAC
[ENA]
¡û
>C161001525
AP014815
Cyanobacteriota
Geminocystis sp. NIES-3708 [AP014815]
807500
807429
-
Val
TAC
[Ensembl]
¡û
>C161049394
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
5494229
5494300
+
Val
TAC
-
¡û
>C161103162
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
3809386
3809315
-
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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