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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402281 (68 seq.)
>W1711138718
LVEG02000005
Gammaproteobacteria
Halofilum ochraceum XJ16 [LVEG]
226973
226899
-
Gly
GCC
[ENA]
¡û
>W1711350344
MCRI01000012
Gammaproteobacteria
Methylophaga muralis [MCRI]
67806
67880
+
Gly
GCC
[ENA]
¡û
>W131186079
ARVU01000001
Gammaproteobacteria
Cycloclasticus pugetii PS-1 [ARVU]
1688331
1688257
-
Gly
GCC
[ENA]
¡û
>W131219215
ATYJ01000001
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
1915436
1915362
-
Gly
GCC
[ENA]
¡û
>W131219217
ATYJ01000001
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
1915216
1915142
-
Gly
GCC
[ENA]
¡û
>W131225912
AUDZ01000005
Gammaproteobacteria
Halomonas halocynthiae DSM 14573 [AUDZ]
111282
111208
-
Gly
GCC
[ENA]
¡û
>W131225916
AUDZ01000007
Gammaproteobacteria
Halomonas halocynthiae DSM 14573 [AUDZ]
2
76
+
Gly
GCC
[ENA]
¡û
>W1711690154
MSEI01000003
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
1182407
1182481
+
Gly
GCC
[ENA]
¡û
>W1711690166
MSEI01000003
Gammaproteobacteria
Idiomarina sp. 5.13 [MSEI]
2662776
2662850
+
Gly
GCC
[ENA]
¡û
>C171057381
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
795961
796035
+
Gly
GCC
-
¡û
>C171057383
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
796222
796296
+
Gly
GCC
-
¡û
>C171057385
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
796516
796590
+
Gly
GCC
-
¡û
>C171057387
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
796843
796917
+
Gly
GCC
-
¡û
>C171057429
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
1076906
1076832
-
Gly
GCC
-
¡û
>WENV180357668
OBNN01058371
[OBNN] marine metagenome; Coastal water
85
13
-
Gly
GCC
[ENA]
¢þ
>WENV180589838
OCOS01023699
[OCOS] marine metagenome; Sterile flask
532
604
+
Gly
GCC
[ENA]
¢þ
>WENV180638702
OCRI01008363
[OCRI] marine metagenome; Sterile flask
31
103
+
Gly
GCC
[ENA]
¢þ
>WENV180698006
ODDE01020418
[ODDE] human metagenome; G_DNA_Supragingival plaque
192
118
-
Gly
GCC
[ENA]
¢þ
>WENV180721848
ODGL01018775
[ODGL] human metagenome; G_DNA_Subgingival plaque
586
660
+
Gly
GCC
[ENA]
¢þ
>WENV180734251
ODGZ01004360
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2933
2859
-
Gly
GCC
[ENA]
¢þ
>WENV180734261
ODGZ01004465
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2252
2178
-
Gly
GCC
[ENA]
¢þ
>W141093339
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1018480
1018554
+
Gly
GCC
[ENA]
¡û
>W141093341
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1018692
1018766
+
Gly
GCC
[ENA]
¡û
>W141093343
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1018900
1018974
+
Gly
GCC
[ENA]
¡û
>W141093345
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1019241
1019315
+
Gly
GCC
[ENA]
¡û
>W141093355
AVBC01000055
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
123259
123185
-
Gly
GCC
[ENA]
¡û
>WENV180987598
ODVK01049818
[ODVK] human metagenome; G_DNA_Supragingival plaque
487
561
+
Gly
GCC
[ENA]
¢þ
>WENV181067787
ODZI01053522
[ODZI] human metagenome; G_DNA_Supragingival plaque
737
811
+
Gly
GCC
[ENA]
¢þ
>WENV181158640
OEIH01004592
[OEIH] human metagenome; G_DNA_Supragingival plaque
2932
3006
+
Gly
GCC
[ENA]
¢þ
>WENV181307275
OFIP01010477
[OFIP] marine metagenome; seawater
472
398
-
Gly
GCC
[ENA]
¢þ
>WENV182578271
OJGM01026326
[OJGM] seawater metagenome; Sea water
190
116
-
Gly
GCC
[ENA]
¢þ
>WENV183615858
OOEC01000010
[OOEC] marine metagenome; sea ice
15417
15491
+
Gly
GCC
[ENA]
¢þ
>WENV183615867
OOEC01000093
[OOEC] marine metagenome; sea ice
286
212
-
Gly
GCC
[ENA]
¢þ
>WENV183616259
OOEC01227998
[OOEC] marine metagenome; sea ice
112
38
-
Gly
GCC
[ENA]
¢þ
>WENV170304155
CESI01023635
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
965
893
-
Gly
GCC
[ENA]
¢þ
>WENV170327178
CESU01050971
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
548
476
-
Gly
GCC
[ENA]
¢þ
>WENV170710617
LNFM01002201
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7416
7342
-
Gly
GCC
[ENA]
¢þ
>WENV170816329
MDSX01028704
[MDSX] marine metagenome; seawater
1790
1862
+
Gly
GCC
[ENA]
¢þ
>WENV170822948
MDSY01048960
[MDSY] marine metagenome; seawater
123
51
-
Gly
GCC
[ENA]
¢þ
>WENV170827435
MDSY01128904
[MDSY] marine metagenome; seawater
4343
4417
+
Gly
GCC
[ENA]
¢þ
>WENV170828654
MDSY01153999
[MDSY] marine metagenome; seawater
1900
1974
+
Gly
GCC
[ENA]
¢þ
>WENV170879703
MDTC01099667
[MDTC] marine metagenome; seawater
10641
10569
-
Gly
GCC
[ENA]
¢þ
>WENV170920724
MDTG01001703
[MDTG] marine metagenome; seawater
115790
115864
+
Gly
GCC
[ENA]
¢þ
>WENV170941735
MDTG01365363
[MDTG] marine metagenome; seawater
4600
4526
-
Gly
GCC
[ENA]
¢þ
>WENV170948371
MEHZ011166706
[MEHZ] marine metagenome; marine surface water
242
168
-
Gly
GCC
[ENA]
¢þ
>W09103761
AAKP01000005
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
19613
19687
+
Gly
GCC
[ENA]
¡û
>W09103762
AAKP01000005
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
19738
19812
+
Gly
GCC
[ENA]
¡û
>W09103784
AAKP01000032
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
927
1001
+
Gly
GCC
[ENA]
¡û
>W1911245417
NSKB01000001
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
128085
128011
-
Gly
GCC
[ENA]
¡û
>W1911245423
NSKB01000002
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
116055
115981
-
Gly
GCC
[ENA]
¡û
>W1911245425
NSKB01000002
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
115860
115786
-
Gly
GCC
[ENA]
¡û
>W1911245427
NSKB01000002
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
115594
115520
-
Gly
GCC
[ENA]
¡û
>W1911585392
PIPW01000001
Gammaproteobacteria
Pseudidiomarina halophila BH195 [PIPW]
730511
730437
-
Gly
GCC
[ENA]
¡û
>W1911585413
PIPW01000003
Gammaproteobacteria
Pseudidiomarina halophila BH195 [PIPW]
345776
345850
+
Gly
GCC
[ENA]
¡û
>W1911585414
PIPW01000003
Gammaproteobacteria
Pseudidiomarina halophila BH195 [PIPW]
345879
345953
+
Gly
GCC
[ENA]
¡û
>W1911585632
PIQB01000001
Gammaproteobacteria
Pseudidiomarina planktonica TS-T11 [PIQB]
390604
390678
+
Gly
GCC
[ENA]
¡û
>W1911585665
PIQB01000002
Gammaproteobacteria
Pseudidiomarina planktonica TS-T11 [PIQB]
25431
25357
-
Gly
GCC
[ENA]
¡û
>W1911585666
PIQB01000002
Gammaproteobacteria
Pseudidiomarina planktonica TS-T11 [PIQB]
25303
25229
-
Gly
GCC
[ENA]
¡û
>W1911824288
QZWD01000001
Gammaproteobacteria
Salinisphaera sp. Q1T1-3 [QZWD]
375061
374987
-
Gly
GCC
[ENA]
¡û
>W1911824290
QZWD01000001
Gammaproteobacteria
Salinisphaera sp. Q1T1-3 [QZWD]
374763
374689
-
Gly
GCC
[ENA]
¡û
>W1810200033
PNRG01000001
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
10757
10831
+
Gly
GCC
[ENA]
¡û
>W1810200071
PNRG01000029
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
70
144
+
Gly
GCC
[ENA]
¡û
>W1810721148
QNRT01000002
Gammaproteobacteria
Arenicella xantha DSM 24032 [QNRT]
207951
207877
-
Gly
GCC
[ENA]
¡û
>W1810721151
QNRT01000002
Gammaproteobacteria
Arenicella xantha DSM 24032 [QNRT]
170237
170163
-
Gly
GCC
[ENA]
¡û
>SRA1050908
SRR035096.49041
454 Sequencing (SRP001817)
509
435
-
Gly
GCC
[SRA]
>C131002372
CP003230
Gammaproteobacteria
Cycloclasticus sp. P1 P1; MCCC 1A01040 [CP003230]
1661267
1661193
-
Gly
GCC
[Ensembl]
¡û
>C131007649
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
2419134
2419208
+
Gly
GCC
-
¡û
>C131007673
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
4337763
4337689
-
Gly
GCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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