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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402723 (113 seq.)
>W1710791149
LJNJ01000297
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_11 [LJNJ]
4066
4140
+
Gln
TTG
[ENA]
¡û
>W1710893930
LNFF01000042
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077554 [LNFF]
15477
15403
-
Gln
TTG
[ENA]
¡û
>W1711128867
LUTP01000023
Gammaproteobacteria
Lonsdalea iberica subsp. iberica [LUTP]
21679
21605
-
Gln
TTG
[ENA]
¡û
>W1711187548
LWPO01000079
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
295
369
+
Gln
TTG
[ENA]
¡û
>W131249922
CAUE01000024
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
14145
14219
+
Gln
TTG
[ENA]
¡û
>C171071278
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
1732919
1732993
+
Gln
TTG
-
¡û
>C171073857
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
117321
117395
+
Gln
TTG
-
¡û
>C171110908
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
1732901
1732975
+
Gln
TTG
-
¡û
>C005226
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
1758961
1759035
+
Gln
TTG
[Ensembl]
¡û
>w024137
AAYJ01000001
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
18353
18277
-
Gln
TTG
[ENA]
¡û
>w020057
AAUP01000001
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
88853
88929
+
Gln
TTG
[ENA]
¡û
>w016754
AAQO01000007
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
18351
18275
-
Gln
TTG
[ENA]
¡û
>w016611
AAQI01000001
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
299098
299174
+
Gln
TTG
[ENA]
¡û
>WENV180137962
OATP01001991
[OATP] human gut metagenome; faeces
7199
7273
+
Gln
TTG
[ENA]
¢þ
>WENV180137963
OATP01001991
[OATP] human gut metagenome; faeces
7324
7398
+
Gln
TTG
[ENA]
¢þ
>WENV180143624
OATY01000017
[OATY] human gut metagenome; faeces
118352
118278
-
Gln
TTG
[ENA]
¢þ
>WENV180143625
OATY01000017
[OATY] human gut metagenome; faeces
118237
118163
-
Gln
TTG
[ENA]
¢þ
>W141027255
AKYP01000220
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
4890
4816
-
Gln
TTG
[ENA]
¡û
>WENV180626253
OCQL01271612
[OCQL] human gut metagenome; human gut
180
106
-
Gln
TTG
[ENA]
¢þ
>C08002992
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
57534
57608
+
Gln
TTG
[Ensembl]
¡û
>C08003052
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
1851404
1851478
+
Gln
TTG
[Ensembl]
¡û
>W141260680
CCAH010000031
Gammaproteobacteria
Coxiella burnetii [CCAH]
42120
42194
+
Gln
TTG
[ENA]
¡û
>W141260722
CCAI010000032
Gammaproteobacteria
Coxiella burnetii [CCAI]
42120
42194
+
Gln
TTG
[ENA]
¡û
>W141260766
CCAJ010000060
Gammaproteobacteria
Coxiella burnetii [CCAJ]
41953
42027
+
Gln
TTG
[ENA]
¡û
>W141260767
CCAK010000011
Gammaproteobacteria
Coxiella burnetii [CCAK]
21908
21982
+
Gln
TTG
[ENA]
¡û
>W141260857
CCAL010000032
Gammaproteobacteria
Coxiella burnetii [CCAL]
41978
42052
+
Gln
TTG
[ENA]
¡û
>W141260899
CCAM010000097
Gammaproteobacteria
Coxiella burnetii [CCAM]
14333
14407
+
Gln
TTG
[ENA]
¡û
>W141267591
CCNR01000008
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
38567
38641
+
Gln
TTG
[ENA]
¡û
>WENV183521290
OMNU01002852
[OMNU] human gut metagenome; feces
174
100
-
Gln
TTG
[ENA]
¢þ
>WENV170155767
CEOG01108073
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4783
4709
-
Gln
TTG
[ENA]
¢þ
>WENV170266805
CERE01108156
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
306556
306630
+
Gln
TTG
[ENA]
¢þ
>WENV170419882
CEUM01181580
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
270
344
+
Gln
TTG
[ENA]
¢þ
>WENV170441816
CEUV01290301
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
860
934
+
Gln
TTG
[ENA]
¢þ
>WENV170711468
LNFM01005384
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
15473
15399
-
Gln
TTG
[ENA]
¢þ
>WENV170890048
MDTD01004056
[MDTD] marine metagenome; seawater
2702
2776
+
Gln
TTG
[ENA]
¢þ
>C191008144
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
387206
387132
-
Gln
TTG
-
¡û
>C191008145
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
387081
387007
-
Gln
TTG
-
¡û
>C191023316
CP023009
Gammaproteobacteria
Lonsdalea britannica 477 [CP023009]
2281147
2281073
-
Gln
TTG
-
¡û
>C191091559
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
506346
506272
-
Gln
TTG
-
¡û
>C191134904
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
33888
33962
+
Gln
TTG
-
¡û
>C191152050
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1260633
1260559
-
Gln
TTG
-
¡û
>C191152051
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1260518
1260444
-
Gln
TTG
-
¡û
>C191174665
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
1732746
1732820
+
Gln
TTG
-
¡û
>W141565249
JIBO01000007
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBO]
9288
9362
+
Gln
TTG
[ENA]
¡û
>W141565319
JIBP01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBP]
410792
410718
-
Gln
TTG
[ENA]
¡û
>W141565385
JIBQ01000003
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBQ]
410811
410737
-
Gln
TTG
[ENA]
¡û
>W141810515
JPVV01000008
Gammaproteobacteria
Coxiella burnetii [JPVV]
2422
2496
+
Gln
TTG
[ENA]
¡û
>C09102967
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
194727
194801
+
Gln
TTG
[Ensembl]
¡û
>C09103009
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
117324
117398
+
Gln
TTG
[Ensembl]
¡û
>W1910643561
LUSR01000006
Gammaproteobacteria
Lonsdalea populi CFCC 12786 [LUSR]
49270
49344
+
Gln
TTG
[ENA]
¡û
>W1910643662
LUST01000002
Gammaproteobacteria
Lonsdalea populi CFCC 13912 [LUST]
49272
49346
+
Gln
TTG
[ENA]
¡û
>W1910643961
LUSY01000003
Gammaproteobacteria
Lonsdalea populi CFCC 11264 [LUSY]
93772
93698
-
Gln
TTG
[ENA]
¡û
>W1910644020
LUSZ01000003
Gammaproteobacteria
Lonsdalea populi CFCC 11263 [LUSZ]
94223
94149
-
Gln
TTG
[ENA]
¡û
>W1910644185
LUTC01000008
Gammaproteobacteria
Lonsdalea populi CFCC 11379 [LUTC]
93559
93485
-
Gln
TTG
[ENA]
¡û
>W1910644278
LUTE01000062
Gammaproteobacteria
Lonsdalea populi CFCC 11196 [LUTE]
17807
17881
+
Gln
TTG
[ENA]
¡û
>W1910644468
LUTI01000020
Gammaproteobacteria
Lonsdalea populi CFCC 13122 [LUTI]
5949
5875
-
Gln
TTG
[ENA]
¡û
>W1910644513
LUTJ01000004
Gammaproteobacteria
Lonsdalea populi CFCC 13123 [LUTJ]
36680
36754
+
Gln
TTG
[ENA]
¡û
>W1911118940
NOLM01000001
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
49581
49655
+
Gln
TTG
[ENA]
¡û
>W1911118982
NOLN01000001
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
49583
49657
+
Gln
TTG
[ENA]
¡û
>W1911119064
NOLO01000025
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
42019
42093
+
Gln
TTG
[ENA]
¡û
>W1911119066
NOLP01000005
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
38724
38798
+
Gln
TTG
[ENA]
¡û
>W1911119148
NOLQ01000026
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
42019
42093
+
Gln
TTG
[ENA]
¡û
>W1911119190
NOLR01000030
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
42140
42214
+
Gln
TTG
[ENA]
¡û
>W1911119232
NOLS01000026
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
42000
42074
+
Gln
TTG
[ENA]
¡û
>W1911119274
NOLT01000026
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
42000
42074
+
Gln
TTG
[ENA]
¡û
>W1911119316
NOLU01000026
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
42000
42074
+
Gln
TTG
[ENA]
¡û
>W1911119358
NOLV01000026
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
42000
42074
+
Gln
TTG
[ENA]
¡û
>W1911136657
NOVF01000026
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
42000
42074
+
Gln
TTG
[ENA]
¡û
>W1911136699
NOVG01000026
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
41947
42021
+
Gln
TTG
[ENA]
¡û
>W1911136741
NOVH01000027
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
42019
42093
+
Gln
TTG
[ENA]
¡û
>W1911136783
NOVI01000052
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
42271
42345
+
Gln
TTG
[ENA]
¡û
>W1911136825
NOVJ01000026
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
42019
42093
+
Gln
TTG
[ENA]
¡û
>W1911136867
NOVK01000026
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
42019
42093
+
Gln
TTG
[ENA]
¡û
>W1911244459
NSHJ01000122
Gammaproteobacteria
Coxiella-like endosymbiont [NSHJ]
6987
6914
-
Gln
TTG
[ENA]
¡û
>W1911397618
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
4356306
4356380
+
Gln
TTG
[ENA]
¡û
>W1911397619
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
4356431
4356505
+
Gln
TTG
[ENA]
¡û
>W1810032530
BGWW01000002
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
243838
243912
+
Gln
TTG
[ENA]
¡û
>W1810032531
BGWW01000002
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
243963
244037
+
Gln
TTG
[ENA]
¡û
>W1810059835
PDLP01000003
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
42220
42294
+
Gln
TTG
[ENA]
¡û
>W1810235688
PPFM01000007
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
60335
60261
-
Gln
TTG
[ENA]
¡û
>W1810235727
PPFN01000006
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
60336
60262
-
Gln
TTG
[ENA]
¡û
>W1810235772
PPFO01000007
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
60335
60261
-
Gln
TTG
[ENA]
¡û
>W1810235811
PPFP01000039
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
14353
14427
+
Gln
TTG
[ENA]
¡û
>W1810235856
PPFQ01000007
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
60335
60261
-
Gln
TTG
[ENA]
¡û
>W1810235874
PPFR01000002
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
41963
42037
+
Gln
TTG
[ENA]
¡û
>W1810784889
QRAZ01002971
Gammaproteobacteria
Hafnia paralvei C10 [QRAZ]
65643
65717
+
Gln
TTG
[ENA]
¡û
>C151077723
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
125198
125124
-
Gln
TTG
[Ensembl]
¡û
>C151102380
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
1759112
1759186
+
Gln
TTG
-
¡û
>W1510060728
CCXO01000001
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
96530
96604
+
Gln
TTG
[ENA]
¡û
>W1510061111
CCYB01000008
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
38567
38641
+
Gln
TTG
[ENA]
¡û
>W1510064634
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
1844983
1845057
+
Gln
TTG
[ENA]
¡û
>W1511399637
JTEU02000018
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
44761
44687
-
Gln
TTG
[ENA]
¡û
>W1511399638
JTEU02000018
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
44646
44572
-
Gln
TTG
[ENA]
¡û
>W1511478121
JWGZ01000022
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
119523
119597
+
Gln
TTG
[ENA]
¡û
>W1511478122
JWGZ01000022
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
119648
119722
+
Gln
TTG
[ENA]
¡û
>W1511555139
JZWL01000004
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
236955
237029
+
Gln
TTG
[ENA]
¡û
>W11163819
AFIG01000001
Gammaproteobacteria
Methylophaga aminisulfidivorans MP [AFIG]
514156
514230
+
Gln
TTG
[ENA]
¡û
>C161017329
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
112754
112828
+
Gln
TTG
[Ensembl]
¡û
>C161059065
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
506346
506272
-
Gln
TTG
-
¡û
>C161065247
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
4253302
4253376
+
Gln
TTG
-
¡û
>C161065248
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
4253427
4253501
+
Gln
TTG
-
¡û
>C161071930
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
482652
482578
-
Gln
TTG
-
¡û
>C161074219
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2462919
2462845
-
Gln
TTG
-
¡û
>C161074220
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2462804
2462730
-
Gln
TTG
-
¡û
>W121008429
AGCI01000106
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
518
444
-
Gln
TTG
[ENA]
¡û
>W121008430
AGCI01000106
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
393
319
-
Gln
TTG
[ENA]
¡û
>W1610655074
LJNJ01000297
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_11 [LJNJ]
4066
4140
+
Gln
TTG
[ENA]
¡û
>W1610754196
LNFF01000042
Gammaproteobacteria
Gammaproteobacteria bacterium Ga0077554 [LNFF]
15477
15403
-
Gln
TTG
[ENA]
¡û
>W1610994679
LXET01000046
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
119371
119445
+
Gln
TTG
[ENA]
¡û
>W1610994680
LXET01000046
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
119496
119570
+
Gln
TTG
[ENA]
¡û
>W1610995003
LXEX01000061
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
64699
64625
-
Gln
TTG
[ENA]
¡û
>W1610995004
LXEX01000061
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
64584
64510
-
Gln
TTG
[ENA]
¡û
>W1710532924
FNQS01000001
Gammaproteobacteria
Lonsdalea quercina [FNQS]
291809
291883
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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