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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402731 (57 seq.)
>W1710785729
LJIC01000107
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
24081
24155
+
Gln
TTG
[ENA]
¡û
>W1711501152
MKRG01000102
Alphaproteobacteria
Afipia sp. 62-7 [MKRG]
30731
30805
+
Gln
TTG
[ENA]
¡û
>W1711502247
MKSM01000083
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
31292
31218
-
Gln
TTG
[ENA]
¡û
>W1711504255
MKUJ01000012
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
4289
4215
-
Gln
TTG
[ENA]
¡û
>W1711783526
MVOD01000019
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
806381
806307
-
Gln
TTG
[ENA]
¡û
>W1711795358
MWPQ01000010
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
129817
129891
+
Gln
TTG
[ENA]
¡û
>W131226871
AUES01000001
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
97532
97606
+
Gln
TTG
[ENA]
¡û
>C014921
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
865255
865329
+
Gln
TTG
[Ensembl]
¡û
>C015354
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
718800
718874
+
Gln
TTG
[Ensembl]
¡û
>C018945
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
4760534
4760460
-
Gln
TTG
[Ensembl]
¡û
>C018982
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
1061293
1061367
+
Gln
TTG
[Ensembl]
¡û
>C019052
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
5041400
5041326
-
Gln
TTG
[Ensembl]
¡û
>w013015
AAMY01000046
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
12552
12628
+
Gln
TTG
[ENA]
¡û
>W141007517
AGWY01000017
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
42894
42968
+
Gln
TTG
[ENA]
¡û
>w001298
AAAF01000013
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
65810
65886
+
Gln
TTG
[ENA]
¡û
>WENV181167264
OEIU01016581
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
75
1
-
Gln
TTG
[ENA]
¢þ
>WENV181306887
OFIN01017613
[OFIN] marine metagenome; sea ice
328
402
+
Gln
TTG
[ENA]
¢þ
>W141194167
AYSU01000031
Alphaproteobacteria
Rhodopseudomonas palustris JSC-3b [AYSU]
104062
104136
+
Gln
TTG
[ENA]
¡û
>W141223313
BADD01000411
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
1982
1908
-
Gln
TTG
[ENA]
¡û
>W141261728
CCAZ010000176
Alphaproteobacteria
Afipia felis [CCAZ]
41501
41427
-
Gln
TTG
[ENA]
¡û
>WENV183728029
PJTP01019635
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
389
463
+
Gln
TTG
[ENA]
¢þ
>WENV183729200
PJTQ01010613
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1016
1090
+
Gln
TTG
[ENA]
¢þ
>WENV183736612
PJUC01023139
[PJUC] soil metagenome; Soil enriched on filter paper
321
247
-
Gln
TTG
[ENA]
¢þ
>WENV183740285
PJUF01001011
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
16
90
+
Gln
TTG
[ENA]
¢þ
>WENV183745156
PJUL01003427
[PJUL] feces metagenome; Chicken feces enriched on filter paper
1031
957
-
Gln
TTG
[ENA]
¢þ
>WENV170706187
LNAP01001572
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23033
22959
-
Gln
TTG
[ENA]
¢þ
>WENV170974886
MTKY01079729
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1075
1001
-
Gln
TTG
[ENA]
¢þ
>C181041847
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
1067542
1067616
+
Gln
TTG
-
¡û
>C181041895
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
1073696
1073770
+
Gln
TTG
-
¡û
>W09103009
AAIS01000002
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
92866
92792
-
Gln
TTG
[ENA]
¡û
>W09103826
AAKZ01000007
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
906
832
-
Gln
TTG
[ENA]
¡û
>W09103838
AAKZ01000012
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
208477
208403
-
Gln
TTG
[ENA]
¡û
>W09104360
AALQ01000002
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
1212765
1212691
-
Gln
TTG
[ENA]
¡û
>W09107610
ABJR01000008
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
50432
50506
+
Gln
TTG
[ENA]
¡û
>W1910182828
BJNF01000021
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
9152
9078
-
Gln
TTG
[ENA]
¡û
>W1910568891
JHAA01000004
Alphaproteobacteria
Rhodopseudomonas palustris PSBS [JHAA]
140059
139985
-
Gln
TTG
[ENA]
¡û
>W1911219142
NRSI01000003
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
333197
333123
-
Gln
TTG
[ENA]
¡û
>W1911760582
QWVU01000048
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
37505
37579
+
Gln
TTG
[ENA]
¡û
>W1911809199
QYYC01000051
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
65213
65287
+
Gln
TTG
[ENA]
¡û
>W1911809220
QYYD01000010
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
149901
149827
-
Gln
TTG
[ENA]
¡û
>W1810672313
QJTI01000010
Alphaproteobacteria
Rhodopseudomonas faecalis JCM 11668 [QJTI]
16602
16676
+
Gln
TTG
[ENA]
¡û
>W1810679457
QKQS01000026
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
64944
65018
+
Gln
TTG
[ENA]
¡û
>W1810784359
QRAQ01000001
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
2172631
2172705
+
Gln
TTG
[ENA]
¡û
>W1810787513
QRDT01000013
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
69028
69102
+
Gln
TTG
[ENA]
¡û
>W1810884410
QUMP01000013
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
69028
69102
+
Gln
TTG
[ENA]
¡û
>W10112815
ADFI01000007
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
145038
144964
-
Gln
TTG
[ENA]
¡û
>W10119578
ADVZ01000004
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
315370
315444
+
Gln
TTG
[ENA]
¡û
>C10110743
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
1094029
1094103
+
Gln
TTG
[Ensembl]
¡û
>W11116042
ADFI01000007
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
145038
144964
-
Gln
TTG
[ENA]
¡û
>C11118742
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
1202607
1202681
+
Gln
TTG
[Ensembl]
¡û
>W11125844
ADVZ01000004
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
315370
315444
+
Gln
TTG
[ENA]
¡û
>W1511625927
LCZM01000046
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
33815
33741
-
Gln
TTG
[ENA]
¡û
>W11168445
AFOF01000022
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
55180
55254
+
Gln
TTG
[ENA]
¡û
>W1610649535
LJIC01000107
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
24081
24155
+
Gln
TTG
[ENA]
¡û
>W1710536630
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
5578547
5578621
+
Gln
TTG
[ENA]
¡û
>W1710548398
FODT01000001
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
262929
262855
-
Gln
TTG
[ENA]
¡û
>W1710568429
FOTP01000003
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
423167
423241
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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