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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402789 (11 seq.)
>WENV181228611
OFEH01000420
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
8186
8260
+
Gly
GCC
[ENA]
¢þ
>WENV181406719
OGCG01001032
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
9158
9084
-
Gly
GCC
[ENA]
¢þ
>WENV181407396
OGCG01023136
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
868
942
+
Gly
GCC
[ENA]
¢þ
>C08005605
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
434624
434553
-
Gly
GCC
[Ensembl]
¡û
>W09107155
ABFI01000059
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
1529
1603
+
Gly
GCC
[ENA]
¡û
>C151003674
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
418652
418578
-
Gly
GCC
[Ensembl]
¡û
>C151003718
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
418688
418614
-
Gly
GCC
[Ensembl]
¡û
>W10115195
ADJO01000003
Aquificota
Hydrogenobaculum sp. SN [ADJO]
6734
6660
-
Gly
GCC
[ENA]
¡û
>W11118781
ADJO01000003
Aquificota
Hydrogenobaculum sp. SN [ADJO]
6734
6660
-
Gly
GCC
[ENA]
¡û
>C131013413
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
418680
418606
-
Gly
GCC
[Ensembl]
¡û
>C131013725
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
418646
418572
-
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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