This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402795 (39 seq.)
>W1711069416
LSFP01000004
Alphaproteobacteria
Zymomonas mobilis [LSFP]
283856
283930
+
Gly
GCC
[ENA]
¡û
>W1711391657
MELX01000009
Alphaproteobacteria
Alphaproteobacteria bacterium GWA1_45_9 [MELX]
35343
35269
-
Gly
GCC
[ENA]
¡û
>W1711391718
MELZ01000030
Alphaproteobacteria
Alphaproteobacteria bacterium GWB1_45_5 [MELZ]
6485
6411
-
Gly
GCC
[ENA]
¡û
>C171115135
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1375624
1375698
+
Gly
GCC
-
¡û
>W131045833
AMRV01000002
Alphaproteobacteria
Pacificimonas flava JLT2015 [AMRV]
422989
423063
+
Gly
GCC
[ENA]
¡û
>W131094274
AONQ01000084
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
15832
15906
+
Gly
GCC
[ENA]
¡û
>W131229838
AUHC01000002
Alphaproteobacteria
Erythrobacter cryptus DSM 12079 [AUHC]
176663
176737
+
Gly
GCC
[ENA]
¡û
>W131046822
AMSR01000017
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
32092
32166
+
Gly
GCC
[ENA]
¡û
>W141076272
ATDO01000075
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
13752
13826
+
Gly
GCC
[ENA]
¡û
>W141078123
ATHO01000162
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
68159
68233
+
Gly
GCC
[ENA]
¡û
>W141223559
BADK01000093
Alphaproteobacteria
Azospirillum sp. B506 [BADK]
160
234
+
Gly
GCC
[ENA]
¡û
>W141223573
BADK01000256
Alphaproteobacteria
Azospirillum sp. B506 [BADK]
9342
9268
-
Gly
GCC
[ENA]
¡û
>WENV170531076
CEWK01091133
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
257
183
-
Gly
GCC
[ENA]
¢þ
>WENV170898396
MDTD01125295
[MDTD] marine metagenome; seawater
10503
10577
+
Gly
GCC
[ENA]
¢þ
>WENV170991301
MWWA01157112
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
341
267
-
Gly
GCC
[ENA]
¢þ
>C181088871
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1954741
1954667
-
Gly
GCC
-
¡û
>C181088922
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1947325
1947251
-
Gly
GCC
-
¡û
>C181089249
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1941326
1941252
-
Gly
GCC
-
¡û
>C191145596
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1938932
1938858
-
Gly
GCC
-
¡û
>C191145647
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1938932
1938858
-
Gly
GCC
-
¡û
>C191145698
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1938932
1938858
-
Gly
GCC
-
¡û
>W09133983
ACQU01000013
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
24802
24876
+
Gly
GCC
[ENA]
¡û
>W141807766
JPOU01000050
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
1255
1329
+
Gly
GCC
[ENA]
¡û
>W141819171
JQMC01000006
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
29029
28955
-
Gly
GCC
[ENA]
¡û
>W1910182428
BJMW01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
21474
21400
-
Gly
GCC
[ENA]
¡û
>W1910182458
BJMX01000003
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
154010
154084
+
Gly
GCC
[ENA]
¡û
>C141005358
CP006604
Alphaproteobacteria
Candidatus Liberibacter americanus str. Sao Paulo [CP006604]
9038
9112
+
Gly
GCC
[Ensembl]
¡û
>C141008796
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1461446
1461520
+
Gly
GCC
[Ensembl]
¡û
>W1910698062
MEMF01000002
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_41_14 [MEMF]
278139
278213
+
Gly
GCC
[ENA]
¡û
>C151004595
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1460533
1460607
+
Gly
GCC
[Ensembl]
¡û
>C151004646
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
1461232
1461306
+
Gly
GCC
[Ensembl]
¡û
>C10114579
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
1463480
1463554
+
Gly
GCC
[Ensembl]
¡û
>W1511352551
JROH01000001
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
2026
1952
-
Gly
GCC
[ENA]
¡û
>C11124219
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1442763
1442837
+
Gly
GCC
[Ensembl]
¡û
>W1511592080
LBIC01000001
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
1018354
1018280
-
Gly
GCC
[ENA]
¡û
>C121003142
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1476399
1476473
+
Gly
GCC
[Ensembl]
¡û
>C121015253
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1437785
1437859
+
Gly
GCC
[Ensembl]
¡û
>W1610909944
LSFP01000004
Alphaproteobacteria
Zymomonas mobilis [LSFP]
283856
283930
+
Gly
GCC
[ENA]
¡û
>WENV077679
AAFX01086580
Soil microbial communities from Minnesota Farm
479
555
+
Gly
GCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK