This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402883 (37 seq.)
>W1711352288
MDDB01000004
Bacillota
Moorella thermoacetica [MDDB]
131277
131351
+
Gly
GCC
[ENA]
¡û
>W1711352443
MDDE01000007
Bacillota
Moorella thermoacetica [MDDE]
108340
108266
-
Gly
GCC
[ENA]
¡û
>W1711428556
MIHH01000009
Bacillota
Moorella thermoacetica [MIHH]
64920
64846
-
Gly
GCC
[ENA]
¡û
>WENV180095912
MTBK01097346
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
23
97
+
Gly
GCC
[ENA]
¢þ
>WENV180097549
MTBK01195346
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1759
1685
-
Gly
GCC
[ENA]
¢þ
>W141278253
JAFF01000016
Bacillota
Thermacetogenium phaeum DSM 12270 [JAFF]
14756
14682
-
Gly
GCC
[ENA]
¡û
>WENV170561142
CZCA01003350
[CZCA] anaerobic digester metagenome; anaerobic digester
1541
1467
-
Gly
GCC
[ENA]
¢þ
>WENV170561890
CZCB01000304
[CZCB] anaerobic digester metagenome; anaerobic digester
64185
64259
+
Gly
GCC
[ENA]
¢þ
>WENV170562005
CZCB01000575
[CZCB] anaerobic digester metagenome; anaerobic digester
1386
1460
+
Gly
GCC
[ENA]
¢þ
>WENV170562354
CZCB01002266
[CZCB] anaerobic digester metagenome; anaerobic digester
8795
8869
+
Gly
GCC
[ENA]
¢þ
>WENV170676644
LDZS01001776
[LDZS] terrestrial metagenome; oil reservoir sample K3
103635
103709
+
Gly
GCC
[ENA]
¢þ
>WENV170676837
LDZS01002406
[LDZS] terrestrial metagenome; oil reservoir sample K3
94
20
-
Gly
GCC
[ENA]
¢þ
>WENV170683711
LFRM01000950
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23410
23484
+
Gly
GCC
[ENA]
¢þ
>WENV170689131
LFRM01278660
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
556
482
-
Gly
GCC
[ENA]
¢þ
>WENV170967049
MTKW01000175
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1594
1520
-
Gly
GCC
[ENA]
¢þ
>WENV170967506
MTKW01001724
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2653
2727
+
Gly
GCC
[ENA]
¢þ
>WENV170968042
MTKW01005657
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
52872
52946
+
Gly
GCC
[ENA]
¢þ
>W09118157
ACCS01000019
Bacillota
Alicyclobacillus acidocaldarius LAA1 [ACCS]
44826
44900
+
Gly
GCC
[ENA]
¡û
>W09118186
ACCS01000054
Bacillota
Alicyclobacillus acidocaldarius LAA1 [ACCS]
2699
2625
-
Gly
GCC
[ENA]
¡û
>W1810010440
BFFN01000005
Bacillota
Moorella sp. Hama-1 [BFFN]
97425
97499
+
Gly
GCC
[ENA]
¡û
>C151094356
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
460204
460278
+
Gly
GCC
-
¡û
>C151094406
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
544091
544165
+
Gly
GCC
-
¡û
>ENV09001821
ACQI01011205
Hydrothermal vent metagenome LCHCB.C1
98
172
+
Gly
GCC
[ENA]
¡û
>C10100035
CP001727
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [CP001727]
2270445
2270371
-
Gly
GCC
[Ensembl]
¡û
>C10100056
CP001727
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [CP001727]
294409
294335
-
Gly
GCC
[Ensembl]
¡û
>W121119351
ALWJ01000047
Bacillota
Sulfobacillus thermosulfidooxidans str. Cutipay [ALWJ]
357718
357644
-
Gly
GCC
[ENA]
¡û
>W1610069127
BCSG01000001
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
87447
87521
+
Gly
GCC
[ENA]
¡û
>W1610069152
BCSG01000019
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
2331
2257
-
Gly
GCC
[ENA]
¡û
>W1610069178
BCSG01000060
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
6025
5951
-
Gly
GCC
[ENA]
¡û
>C131005589
CP003732
Bacillota
Thermacetogenium phaeum DSM 12270 [CP003732]
1020543
1020617
+
Gly
GCC
[Ensembl]
¡û
>W1610613102
LGFL01000001
Bacillota
Thermoanaerobacterales bacterium 50_218 [LGFL]
103635
103709
+
Gly
GCC
[ENA]
¡û
>W1610613209
LGFO01000029
Bacillota
Thermacetogenium phaeum [LGFO]
94
20
-
Gly
GCC
[ENA]
¡û
>W1710066500
BCSG01000001
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
87447
87521
+
Gly
GCC
[ENA]
¡û
>W1710066525
BCSG01000019
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
2331
2257
-
Gly
GCC
[ENA]
¡û
>W1710066551
BCSG01000060
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
6025
5951
-
Gly
GCC
[ENA]
¡û
>W1710734309
LGFL01000001
Bacillota
Thermoanaerobacterales bacterium 50_218 [LGFL]
103635
103709
+
Gly
GCC
[ENA]
¡û
>W1710734416
LGFO01000029
Bacillota
Thermacetogenium phaeum [LGFO]
94
20
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK