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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402957 (25 seq.)
>W131203830
ASZU01000020
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
33616
33542
-
Asn
GTT
[ENA]
¡û
>W131203852
ASZU01000033
Bacillota
Laceyella sacchari 1·î1Æü [ASZU]
10165
10239
+
Asn
GTT
[ENA]
¡û
>WENV180298630
OBJA01484333
[OBJA] soil metagenome; sediment, water from around vicinity
83
157
+
Asn
GTT
[ENA]
¢þ
>WENV170019287
BBPD01007687
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
5856
5930
+
Asn
GTT
[ENA]
¢þ
>WENV170020662
BBPE01017127
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
847
921
+
Asn
GTT
[ENA]
¢þ
>WENV170021487
BBPF01014319
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1070
996
-
Asn
GTT
[ENA]
¢þ
>WENV170561761
CZCA01027134
[CZCA] anaerobic digester metagenome; anaerobic digester
1064
1138
+
Asn
GTT
[ENA]
¢þ
>WENV170967782
MTKW01003428
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4258
4332
+
Asn
GTT
[ENA]
¢þ
>WENV170967829
MTKW01003735
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
73
147
+
Asn
GTT
[ENA]
¢þ
>C181124126
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
294099
294173
+
Asn
GTT
-
¡û
>C181124141
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
295344
295418
+
Asn
GTT
-
¡û
>C181124148
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
323440
323514
+
Asn
GTT
-
¡û
>C181124207
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
2017208
2017134
-
Asn
GTT
-
¡û
>W1810365320
PVTZ01000018
Bacillota
Laceyella sediminis RHA1 [PVTZ]
58212
58138
-
Asn
GTT
[ENA]
¡û
>W1810365327
PVTZ01000018
Bacillota
Laceyella sediminis RHA1 [PVTZ]
30083
30009
-
Asn
GTT
[ENA]
¡û
>W1810365347
PVTZ01000021
Bacillota
Laceyella sediminis RHA1 [PVTZ]
1568
1494
-
Asn
GTT
[ENA]
¡û
>C151045323
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1549399
1549325
-
Asn
GTT
[Ensembl]
¡û
>W1610615074
LGKI01000023
Bacillota
Thermoactinomyces vulgaris [LGKI]
95
21
-
Asn
GTT
[ENA]
¡û
>W1610615085
LGKI01000068
Bacillota
Thermoactinomyces vulgaris [LGKI]
27786
27860
+
Asn
GTT
[ENA]
¡û
>W1610615110
LGKI01000179
Bacillota
Thermoactinomyces vulgaris [LGKI]
95
21
-
Asn
GTT
[ENA]
¡û
>W1610615111
LGKI01000218
Bacillota
Thermoactinomyces vulgaris [LGKI]
297
371
+
Asn
GTT
[ENA]
¡û
>W1710736320
LGKI01000023
Bacillota
Thermoactinomyces vulgaris [LGKI]
95
21
-
Asn
GTT
[ENA]
¡û
>W1710736331
LGKI01000068
Bacillota
Thermoactinomyces vulgaris [LGKI]
27786
27860
+
Asn
GTT
[ENA]
¡û
>W1710736356
LGKI01000179
Bacillota
Thermoactinomyces vulgaris [LGKI]
95
21
-
Asn
GTT
[ENA]
¡û
>W1710736357
LGKI01000218
Bacillota
Thermoactinomyces vulgaris [LGKI]
297
371
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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