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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403079 (69 seq.)
>W1711078556
LSMZ01000062
Bacillota
Clostridium sp. link-BC1 [LSMZ]
133345
133271
-
Gly
GCC
[ENA]
¡û
>W1711078564
LSMZ01000071
Bacillota
Clostridium sp. link-BC1 [LSMZ]
20096
20022
-
Gly
GCC
[ENA]
¡û
>W1711222554
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
2482240
2482166
-
Gly
GCC
[ENA]
¡û
>W1711222556
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
1737100
1737026
-
Gly
GCC
[ENA]
¡û
>W131204243
ATAY01000094
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
136845
136771
-
Gly
GCC
[ENA]
¡û
>W131204209
ATAY01000022
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
15519
15445
-
Gly
GCC
[ENA]
¡û
>C007151
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
2198174
2198100
-
Gly
GCC
[Ensembl]
¡û
>w020721
AAVC01000001
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
102217
102291
+
Gly
GCC
[ENA]
¡û
>WENV180298024
OBJA01142998
[OBJA] soil metagenome; sediment, water from around vicinity
46
120
+
Gly
GCC
[ENA]
¢þ
>W141067357
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
1205967
1206041
+
Gly
GCC
[ENA]
¡û
>W141067367
ASAA01000010
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
290474
290548
+
Gly
GCC
[ENA]
¡û
>WENV180711042
ODFM01037655
[ODFM] human metagenome; G_DNA_Stool
70
144
+
Gly
GCC
[ENA]
¢þ
>WENV180715161
ODFW01002863
[ODFW] human metagenome; G_DNA_Stool
111
185
+
Gly
GCC
[ENA]
¢þ
>WENV180828845
ODKA01028095
[ODKA] human metagenome; G_DNA_Stool
250
324
+
Gly
GCC
[ENA]
¢þ
>WENV180962777
ODUN01028450
[ODUN] human metagenome; G_DNA_Stool
71
145
+
Gly
GCC
[ENA]
¢þ
>WENV181117993
OEFH01003279
[OEFH] human metagenome; G_DNA_Stool
9489
9415
-
Gly
GCC
[ENA]
¢þ
>WENV181230744
OFEK01002853
[OFEK] activated sludge metagenome; Anaerobic digester
8348
8274
-
Gly
GCC
[ENA]
¢þ
>WENV181230983
OFEK01006537
[OFEK] activated sludge metagenome; Anaerobic digester
3796
3870
+
Gly
GCC
[ENA]
¢þ
>WENV181360491
OFMX01024491
[OFMX] human gut metagenome; human gut
837
911
+
Gly
GCC
[ENA]
¢þ
>W141233374
BAVR01000022
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
17641
17567
-
Gly
GCC
[ENA]
¡û
>W141233397
BAVR01000066
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
6057
5983
-
Gly
GCC
[ENA]
¡û
>W141251486
CBQO010000064
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
19429
19355
-
Gly
GCC
[ENA]
¡û
>WENV182711347
OJPD01026500
[OJPD] human gut metagenome; stool sample
700
626
-
Gly
GCC
[ENA]
¢þ
>W141279247
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
2901473
2901547
+
Gly
GCC
[ENA]
¡û
>W141279274
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1307081
1307007
-
Gly
GCC
[ENA]
¡û
>WENV183247632
OLRF01005888
[OLRF] human gut metagenome; faeces
1855
1781
-
Gly
GCC
[ENA]
¢þ
>WENV183778633
PPYF01129188
[PPYF] human gut metagenome; stool from patient with Crohn's disease
122310
122384
+
Gly
GCC
[ENA]
¢þ
>WENV183779743
PPYF01149950
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1082
1008
-
Gly
GCC
[ENA]
¢þ
>WENV170644823
JMBW01114249
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
157
231
+
Gly
GCC
[ENA]
¢þ
>WENV170685860
LFRM01112816
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
104
178
+
Gly
GCC
[ENA]
¢þ
>WENV170969090
MTKW01020238
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1071
997
-
Gly
GCC
[ENA]
¢þ
>C181054350
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
697069
697143
+
Gly
GCC
-
¡û
>W09100480
AABG04000073
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
10135
10061
-
Gly
GCC
[ENA]
¡û
>W141816718
JQKC01000002
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
270764
270838
+
Gly
GCC
[ENA]
¡û
>W141816740
JQKC01000019
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [JQKC]
72816
72744
-
Gly
GCC
[ENA]
¡û
>C09103098
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
2676759
2676685
-
Gly
GCC
[Ensembl]
¡û
>W1910884577
NEMB01000001
Bacillota
Acetivibrio saccincola A7 [NEMB]
17636
17562
-
Gly
GCC
[ENA]
¡û
>W1910884586
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
982142
982216
+
Gly
GCC
[ENA]
¡û
>W1910884594
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
3678563
3678489
-
Gly
GCC
[ENA]
¡û
>W1910884629
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
11777
11703
-
Gly
GCC
[ENA]
¡û
>W1910927499
NIOI01000001
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
2500081
2500007
-
Gly
GCC
[ENA]
¡û
>W1910927537
NIOI01000004
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
85764
85838
+
Gly
GCC
[ENA]
¡û
>W1910927560
NIOJ01000019
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
57073
56999
-
Gly
GCC
[ENA]
¡û
>W1910927570
NIOJ01000029
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
23882
23808
-
Gly
GCC
[ENA]
¡û
>W1910927627
NIOK01000029
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
23882
23808
-
Gly
GCC
[ENA]
¡û
>W1911572337
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
2964851
2964777
-
Gly
GCC
[ENA]
¡û
>W10105881
ACXX01000008
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
29657
29583
-
Gly
GCC
[ENA]
¡û
>W10105902
ACXX01000051
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
15268
15194
-
Gly
GCC
[ENA]
¡û
>W10126169
AEDB01000028
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
29314
29240
-
Gly
GCC
[ENA]
¡û
>W10126180
AEDB01000047
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
18135
18209
+
Gly
GCC
[ENA]
¡û
>C11106489
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
2984649
2984575
-
Gly
GCC
[Ensembl]
¡û
>W11108179
ACXX02000001
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
583110
583184
+
Gly
GCC
[ENA]
¡û
>W11108225
ACXX02000014
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
108261
108335
+
Gly
GCC
[ENA]
¡û
>W1511327357
JQID01000098
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2927
2853
-
Gly
GCC
[ENA]
¡û
>W11133430
AEDB01000028
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
29314
29240
-
Gly
GCC
[ENA]
¡û
>W11133441
AEDB01000047
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
18135
18209
+
Gly
GCC
[ENA]
¡û
>W1511706064
LGTC01000001
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [LGTC]
4553837
4553763
-
Gly
GCC
[ENA]
¡û
>W1511706069
LGTC01000001
Bacillota
Pseudobacteroides cellulosolvens ATCC 35603 = DSM 2933 [LGTC]
3085854
3085782
-
Gly
GCC
[ENA]
¡û
>C121005034
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
581658
581732
+
Gly
GCC
[Ensembl]
¡û
>C121005036
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
1322941
1323015
+
Gly
GCC
[Ensembl]
¡û
>C121009857
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4138113
4138039
-
Gly
GCC
[Ensembl]
¡û
>C121009859
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
3120579
3120505
-
Gly
GCC
[Ensembl]
¡û
>C161060798
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
2964851
2964777
-
Gly
GCC
-
¡û
>C161097550
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2987293
2987219
-
Gly
GCC
-
¡û
>W121036122
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
124805
124879
+
Gly
GCC
[ENA]
¡û
>W1610043737
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49544
49618
+
Gly
GCC
[ENA]
¡û
>W1610043740
BBAA01000006
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
267
193
-
Gly
GCC
[ENA]
¡û
>W1710040897
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49544
49618
+
Gly
GCC
[ENA]
¡û
>W1710040900
BBAA01000006
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
267
193
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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