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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403565 (100 seq.)
>W1711250270
LYMW01000125
Alphaproteobacteria
Rickettsia sp. wq [LYMW]
4100
4174
+
Gly
GCC
[ENA]
¡û
>C171035037
CP015010
Alphaproteobacteria
Rickettsia bellii [CP015010]
844717
844791
+
Gly
GCC
-
¡û
>C171086324
CP018913
Alphaproteobacteria
Rickettsia rickettsii Iowa [CP018913]
842848
842922
+
Gly
GCC
-
¡û
>C171086358
CP018914
Alphaproteobacteria
Rickettsia rickettsii Iowa [CP018914]
842859
842933
+
Gly
GCC
-
¡û
>W131111750
APMN01000009
Alphaproteobacteria
Rickettsia prowazekii str. GvF12 [APMN]
412657
412731
+
Gly
GCC
[ENA]
¡û
>C018284
CP000087
Alphaproteobacteria
Rickettsia bellii RML369-C [CP000087]
437872
437946
+
Gly
GCC
[Ensembl]
¡û
>C018328
AE006914
Alphaproteobacteria
Rickettsia conorii str. Malish 7 [AE006914]
838946
839020
+
Gly
GCC
[Ensembl]
¡û
>C018569
CP000053
Alphaproteobacteria
Rickettsia felis URRWXCal2 URRWXCal2; California 2 [CP000053]
1015023
1015097
+
Gly
GCC
[Ensembl]
¡û
>C019084
AJ235269
Alphaproteobacteria
Rickettsia prowazekii [AJ235269]
736151
736225
+
Gly
GCC
[Ensembl]
¡û
>C019364
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
742580
742654
+
Gly
GCC
[Ensembl]
¡û
>w021480
AAVR01000001
Alphaproteobacteria
Rickettsia massiliae MTU5 [AAVR]
921455
921531
+
Gly
GCC
[ENA]
¡û
>w020520
AAUY01000001
Alphaproteobacteria
Rickettsia africae ESF-5 [AAUY]
845619
845695
+
Gly
GCC
[ENA]
¡û
>w017292
AARC01000001
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [AARC]
1110306
1110230
-
Gly
GCC
[ENA]
¡û
>w005085
AAFF01000001
Alphaproteobacteria
Rickettsia canadensis str. McKiel [AAFF]
428642
428566
-
Gly
GCC
[ENA]
¡û
>w005038
AAFE01000001
Alphaproteobacteria
Rickettsia akari str. Hartford [AAFE]
821119
821195
+
Gly
GCC
[ENA]
¡û
>w003246
AADJ01000001
Alphaproteobacteria
Rickettsia rickettsii [AADJ]
831432
831508
+
Gly
GCC
[ENA]
¡û
>w003005
AABW01000001
Alphaproteobacteria
Rickettsia sibirica 246 [AABW]
1090226
1090150
-
Gly
GCC
[ENA]
¡û
>W141147967
AWXL01000019
Alphaproteobacteria
Rickettsia gravesii gravesii BWI-1 [AWXL]
39971
40045
+
Gly
GCC
[ENA]
¡û
>WENV181838507
OGVN01001636
[OGVN] freshwater metagenome; freshwater
2235
2309
+
Gly
GCC
[ENA]
¢þ
>C08008077
CP000409
Alphaproteobacteria
Rickettsia canadensis str. McKiel [CP000409]
428641
428570
-
Gly
GCC
[Ensembl]
¡û
>C08008370
CP000848
Alphaproteobacteria
Rickettsia rickettsii str. 'Sheila Smith' [CP000848]
831433
831507
+
Gly
GCC
[Ensembl]
¡û
>C08008038
CP000849
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [CP000849]
1110305
1110234
-
Gly
GCC
[Ensembl]
¡û
>C08007932
CP000847
Alphaproteobacteria
Rickettsia akari str. Hartford [CP000847]
821120
821194
+
Gly
GCC
[Ensembl]
¡û
>C08008250
CP000683
Alphaproteobacteria
Rickettsia massiliae MTU5 [CP000683]
921456
921530
+
Gly
GCC
[Ensembl]
¡û
>W141255353
CBUA010000074
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [CBUA]
15901
15827
-
Gly
GCC
[ENA]
¡û
>C08008336
CP000766
Alphaproteobacteria
Rickettsia rickettsii str. Iowa [CP000766]
842809
842883
+
Gly
GCC
[Ensembl]
¡û
>WENV170609132
FUWD011286408
[FUWD] metagenome; unknown
38
112
+
Gly
GCC
[ENA]
¢þ
>WENV170646889
JQIA01005101
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2457
2383
-
Gly
GCC
[ENA]
¢þ
>C181002269
AP017572
Alphaproteobacteria
Rickettsia japonica DT-1 [AP017572]
851229
851303
+
Gly
GCC
-
¡û
>C181002302
AP017573
Alphaproteobacteria
Rickettsia japonica HH-1 [AP017573]
851141
851215
+
Gly
GCC
-
¡û
>C181002335
AP017574
Alphaproteobacteria
Rickettsia japonica HH06154 [AP017574]
851228
851302
+
Gly
GCC
-
¡û
>C181002368
AP017575
Alphaproteobacteria
Rickettsia japonica HH07124 [AP017575]
851208
851282
+
Gly
GCC
-
¡û
>C181002401
AP017576
Alphaproteobacteria
Rickettsia japonica HH07167 [AP017576]
851229
851303
+
Gly
GCC
-
¡û
>C181002434
AP017577
Alphaproteobacteria
Rickettsia japonica MZ08014 [AP017577]
851228
851302
+
Gly
GCC
-
¡û
>C181002467
AP017578
Alphaproteobacteria
Rickettsia japonica Nakase [AP017578]
851229
851303
+
Gly
GCC
-
¡û
>C181002500
AP017579
Alphaproteobacteria
Rickettsia japonica OHH-1 [AP017579]
850768
850842
+
Gly
GCC
-
¡û
>C181002533
AP017580
Alphaproteobacteria
Rickettsia japonica PO-1 [AP017580]
851141
851215
+
Gly
GCC
-
¡û
>C181002566
AP017581
Alphaproteobacteria
Rickettsia japonica Tsuneishi [AP017581]
851229
851303
+
Gly
GCC
-
¡û
>C181002599
AP017602
Alphaproteobacteria
Rickettsia japonica YH_M [AP017602]
851229
851303
+
Gly
GCC
-
¡û
>C181019106
CP016305
Alphaproteobacteria
Rickettsia sp. MEAM1 [Bemisia tabaci] [CP016305]
925483
925557
+
Gly
GCC
-
¡û
>C191083864
CP032049
Alphaproteobacteria
Rickettsia japonica LA4/2015 [CP032049]
850778
850852
+
Gly
GCC
-
¡û
>C191176573
CP040325
Alphaproteobacteria
Rickettsia parkeri Atlantic Rainforest [CP040325]
920866
920940
+
Gly
GCC
-
¡û
>C191225757
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
742159
742233
+
Gly
GCC
-
¡û
>W09127563
ACLC01000046
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes scapularis [ACLC]
13297
13371
+
Gly
GCC
[ENA]
¡û
>C09108632
CP001612
Alphaproteobacteria
Rickettsia africae ESF-5 [CP001612]
847448
847522
+
Gly
GCC
[Ensembl]
¡û
>C09108968
CP001227
Alphaproteobacteria
Rickettsia peacockii str. Rustic [CP001227]
596143
596217
+
Gly
GCC
[Ensembl]
¡û
>W1911517941
OFAL01000006
Alphaproteobacteria
Rickettsia fournieri AUS118 [OFAL]
1959
2033
+
Gly
GCC
[ENA]
¡û
>C151008542
CP006009
Alphaproteobacteria
Rickettsia rickettsii str. R [CP006009]
831469
831543
+
Gly
GCC
[Ensembl]
¡û
>C151008576
CP006010
Alphaproteobacteria
Rickettsia rickettsii str. Morgan [CP006010]
842963
843037
+
Gly
GCC
[Ensembl]
¡û
>C151094953
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
810281
810207
-
Gly
GCC
-
¡û
>C151104108
LN794217
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [LN794217]
1120924
1120998
+
Gly
GCC
[Ensembl]
¡û
>C11118574
CP002912
Alphaproteobacteria
Rickettsia conorii subsp. heilongjiangensis 054 [CP002912]
849928
850002
+
Gly
GCC
[Ensembl]
¡û
>W1511365682
JSEL01000022
Alphaproteobacteria
Rickettsia felis LSU-Lb [JSEL]
8567
8493
-
Gly
GCC
[ENA]
¡û
>W1511365714
JSEM01000013
Alphaproteobacteria
Rickettsia felis str. LSU [JSEM]
23800
23726
-
Gly
GCC
[ENA]
¡û
>W1511489424
JWSW01000010
Alphaproteobacteria
Rickettsia asembonensis asemboensis NMRCii [JWSW]
12828
12754
-
Gly
GCC
[ENA]
¡û
>W1511574240
LANQ01000001
Alphaproteobacteria
Rickettsia felis str. Pedreira [LANQ]
1301122
1301048
-
Gly
GCC
[ENA]
¡û
>W1511574670
LAOC01000001
Alphaproteobacteria
Rickettsia rhipicephali str. Ect [LAOC]
1241534
1241608
+
Gly
GCC
[ENA]
¡û
>W1511574849
LAOH01000050
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Darkwater [LAOH]
15214
15140
-
Gly
GCC
[ENA]
¡û
>W1511574882
LAOI01000001
Alphaproteobacteria
Rickettsia bellii str. RML An4 [LAOI]
980357
980283
-
Gly
GCC
[ENA]
¡û
>W1511574921
LAOJ01000001
Alphaproteobacteria
Rickettsia bellii str. RML Mogi [LAOJ]
787330
787256
-
Gly
GCC
[ENA]
¡û
>W1511574958
LAOK01000001
Alphaproteobacteria
Rickettsia parkeri str. Grand Bay [LAOK]
566029
565955
-
Gly
GCC
[ENA]
¡û
>W1511574972
LAOL01000001
Alphaproteobacteria
Rickettsia parkeri str. AT#24 [LAOL]
200459
200533
+
Gly
GCC
[ENA]
¡û
>W1511575071
LAOO01000001
Alphaproteobacteria
Rickettsia parkeri str. Tate's Hell [LAOO]
522553
522479
-
Gly
GCC
[ENA]
¡û
>W1511575098
LAOP01000001
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes pacificus of Ixodes pacificus Humboldt [LAOP]
1018523
1018449
-
Gly
GCC
[ENA]
¡û
>W1511575121
LAOQ01000002
Alphaproteobacteria
Rickettsia argasii T170-B [LAOQ]
167244
167318
+
Gly
GCC
[ENA]
¡û
>C121000196
AP011533
Alphaproteobacteria
Rickettsia japonica YH [AP011533]
936418
936344
-
Gly
GCC
[Ensembl]
¡û
>C121002580
CP002428
Alphaproteobacteria
Rickettsia slovaca 13-B [CP002428]
846961
847035
+
Gly
GCC
[Ensembl]
¡û
>C121010395
CP003304
Alphaproteobacteria
Rickettsia canadensis str. CA410 [CP003304]
427972
427898
-
Gly
GCC
[Ensembl]
¡û
>C121010428
CP003305
Alphaproteobacteria
Rickettsia rickettsii str. Brazil [CP003305]
337881
337807
-
Gly
GCC
[Ensembl]
¡û
>C121010447
CP003306
Alphaproteobacteria
Rickettsia rickettsii str. Colombia [CP003306]
842350
842424
+
Gly
GCC
[Ensembl]
¡û
>C121010481
CP003307
Alphaproteobacteria
Rickettsia rickettsii str. Arizona [CP003307]
842447
842521
+
Gly
GCC
[Ensembl]
¡û
>C121010516
CP003308
Alphaproteobacteria
Rickettsia philipii str. 364D [CP003308]
859019
859093
+
Gly
GCC
[Ensembl]
¡û
>C121010548
CP003309
Alphaproteobacteria
Rickettsia rickettsii str. Hino [CP003309]
842931
843005
+
Gly
GCC
[Ensembl]
¡û
>C121010579
CP003311
Alphaproteobacteria
Rickettsia rickettsii str. Hlp#2 [CP003311]
843565
843639
+
Gly
GCC
[Ensembl]
¡û
>C121010784
CP003318
Alphaproteobacteria
Rickettsia rickettsii str. Hauke [CP003318]
842822
842896
+
Gly
GCC
[Ensembl]
¡û
>C121010831
CP003319
Alphaproteobacteria
Rickettsia massiliae str. AZT80 [CP003319]
617463
617389
-
Gly
GCC
[Ensembl]
¡û
>C121011219
CP003334
Alphaproteobacteria
Rickettsia amblyommatis str. GAT-30V [CP003334]
811271
811197
-
Gly
GCC
[Ensembl]
¡û
>C121011255
CP003338
Alphaproteobacteria
Rickettsia australis str. Cutlack [CP003338]
603862
603788
-
Gly
GCC
[Ensembl]
¡û
>C121011308
CP003341
Alphaproteobacteria
Rickettsia parkeri str. Portsmouth [CP003341]
873671
873745
+
Gly
GCC
[Ensembl]
¡û
>C121011341
CP003342
Alphaproteobacteria
Rickettsia rhipicephali str. 3-7-female6-CWPP [CP003342]
936688
936762
+
Gly
GCC
[Ensembl]
¡û
>C121011772
CP003375
Alphaproteobacteria
Rickettsia slovaca str. D-CWPP [CP003375]
846967
847041
+
Gly
GCC
[Ensembl]
¡û
>C121012197
CP003392
Alphaproteobacteria
Rickettsia prowazekii str. Katsinyian [CP003392]
736147
736221
+
Gly
GCC
[Ensembl]
¡û
>C121012230
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
736122
736196
+
Gly
GCC
[Ensembl]
¡û
>C121012263
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
734282
734356
+
Gly
GCC
[Ensembl]
¡û
>C121012300
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
1078313
1078387
+
Gly
GCC
[Ensembl]
¡û
>C161051833
CP013133
Alphaproteobacteria
Rickettsia rhipicephali HJ#5 [CP013133]
502320
502246
-
Gly
GCC
[Ensembl]
¡û
>W121045277
AICO01000001
Alphaproteobacteria
Rickettsia helvetica C9P9 [AICO]
571007
570933
-
Gly
GCC
[ENA]
¡û
>W121061877
AJHC01000005
Alphaproteobacteria
Rickettsia conorii subsp. indica ITTR [AJHC]
40557
40631
+
Gly
GCC
[ENA]
¡û
>W121068493
AJUR01000014
Alphaproteobacteria
Rickettsia conorii subsp. caspia A-167 [AJUR]
37670
37744
+
Gly
GCC
[ENA]
¡û
>W121069164
AJVP01000024
Alphaproteobacteria
Rickettsia conorii subsp. israelensis ISTT CDC1 [AJVP]
38044
38118
+
Gly
GCC
[ENA]
¡û
>W121070056
AJWD01000483
Alphaproteobacteria
Rickettsia sp. MEAM1 (Bemisia tabaci) [AJWD]
814
740
-
Gly
GCC
[ENA]
¡û
>W121102326
AKVZ01000023
Alphaproteobacteria
Rickettsia australis str. Phillips [AKVZ]
49159
49233
+
Gly
GCC
[ENA]
¡û
>W1610061550
BCMR01000009
Alphaproteobacteria
Rickettsia sp. Tenjiku01 [BCMR]
13299
13225
-
Gly
GCC
[ENA]
¡û
>W121033378
AHIZ01000004
Alphaproteobacteria
Rickettsia sibirica subsp. sibirica BJ-90 [AHIZ]
14079
14005
-
Gly
GCC
[ENA]
¡û
>W121044092
AHZB01000015
Alphaproteobacteria
Rickettsia sibirica subsp. mongolitimonae HA-91 [AHZB]
37937
38011
+
Gly
GCC
[ENA]
¡û
>W121067881
AJTT01000006
Alphaproteobacteria
Rickettsia honei RB [AJTT]
14333
14259
-
Gly
GCC
[ENA]
¡û
>C131014637
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
33126
33052
-
Gly
GCC
[Ensembl]
¡û
>W1610596651
LECS01000004
Alphaproteobacteria
Rickettsia endosymbiont of Proechinophthirus fluctus [LECS]
569902
569976
+
Gly
GCC
[ENA]
¡û
>W1710059215
BCMR01000009
Alphaproteobacteria
Rickettsia sp. Tenjiku01 [BCMR]
13299
13225
-
Gly
GCC
[ENA]
¡û
>W1710717656
LECS01000004
Alphaproteobacteria
Rickettsia endosymbiont of Proechinophthirus fluctus [LECS]
569902
569976
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK