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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403610 (16 seq.)
>W1712109208
NJFD01000002
Actinomycetota
Mobiluncus mulieris [NJFD]
1203360
1203286
-
His
GTG
[ENA]
¡û
>WENV180403731
OBRT01010612
[OBRT] human gut metagenome; ENVO:feces
760
832
+
His
GTG
[ENA]
¢þ
>WENV180405670
OBTM01064805
[OBTM] human gut metagenome; ENVO:feces
216
144
-
His
GTG
[ENA]
¢þ
>WENV180712643
ODFT01011956
[ODFT] human metagenome; G_DNA_Posterior fornix
470
542
+
His
GTG
[ENA]
¢þ
>W09118042
ACCQ01000004
Actinomycetota
Mobiluncus curtisii ATCC 43063 [ACCQ]
179728
179802
+
His
GTG
[ENA]
¡û
>W09127305
ACKW01000041
Actinomycetota
Mobiluncus mulieris ATCC 35243 [ACKW]
90878
90952
+
His
GTG
[ENA]
¡û
>W10110118
ADBR01000031
Actinomycetota
Mobiluncus mulieris 1·î28Æü [ADBR]
251082
251008
-
His
GTG
[ENA]
¡û
>W10127265
AEEE01000015
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
208411
208485
+
His
GTG
[ENA]
¡û
>W10127872
AEET01000044
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
90603
90677
+
His
GTG
[ENA]
¡û
>C10109288
CP001992
Actinomycetota
Mobiluncus curtisii ATCC 43063 [CP001992]
235669
235743
+
His
GTG
[Ensembl]
¡û
>W11112555
ADBR01000031
Actinomycetota
Mobiluncus mulieris 1·î28Æü [ADBR]
251082
251008
-
His
GTG
[ENA]
¡û
>W11134753
AEEE01000015
Actinomycetota
Mobiluncus curtisii subsp. curtisii ATCC 35241 [AEEE]
208411
208485
+
His
GTG
[ENA]
¡û
>W11135360
AEET01000044
Actinomycetota
Mobiluncus mulieris ATCC 35239 [AEET]
90603
90677
+
His
GTG
[ENA]
¡û
>W11137172
AEGV01000011
Actinomycetota
Mobiluncus mulieris FB024-16 [AEGV]
133
59
-
His
GTG
[ENA]
¡û
>W11143528
AEPY01000011
Actinomycetota
Mobiluncus curtisii ATCC 51333 [AEPY]
208053
208127
+
His
GTG
[ENA]
¡û
>W11143544
AEPZ01000003
Actinomycetota
Mobiluncus holmesii subsp. holmesii ATCC 35242 [AEPZ]
957
883
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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