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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403657 (77 seq.)
>W1711069012
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1587
1660
+
Gln
TTG
[ENA]
¡û
>W131196453
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
1509
1582
+
Gln
TTG
[ENA]
¡û
>W1711484757
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
1508
1581
+
Gln
TTG
[ENA]
¡û
>W1711484810
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
17422
17349
-
Gln
TTG
[ENA]
¡û
>W1711484844
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
2226
2299
+
Gln
TTG
[ENA]
¡û
>W1711484945
MKDG01000035
Bacillota
Latilactobacillus curvatus [MKDG]
19150
19074
-
Gln
TTG
[ENA]
¡û
>W1711485010
MKDI01000009
Bacillota
Latilactobacillus sakei [MKDI]
25901
25828
-
Gln
TTG
[ENA]
¡û
>W1711485061
MKDJ01000020
Bacillota
Latilactobacillus sakei [MKDJ]
1032
1105
+
Gln
TTG
[ENA]
¡û
>W1711485247
MKDR01000039
Bacillota
Latilactobacillus curvatus [MKDR]
35881
35957
+
Gln
TTG
[ENA]
¡û
>W1711487526
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
1541
1614
+
Gln
TTG
[ENA]
¡û
>W1711487540
MKGC01000006
Bacillota
Latilactobacillus curvatus [MKGC]
22078
22154
+
Gln
TTG
[ENA]
¡û
>W1711487563
MKGD01000010
Bacillota
Latilactobacillus curvatus [MKGD]
87796
87720
-
Gln
TTG
[ENA]
¡û
>C012626
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
452665
452736
+
Gln
TTG
[Ensembl]
¡û
>W141228375
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
26082
26009
-
Gln
TTG
[ENA]
¡û
>C181003656
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
26092
26019
-
Gln
TTG
-
¡û
>C181003709
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1453275
1453202
-
Gln
TTG
-
¡û
>C181044617
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
452350
452423
+
Gln
TTG
-
¡û
>C181066141
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1772251
1772175
-
Gln
TTG
-
¡û
>C181071480
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
5429
5502
+
Gln
TTG
-
¡û
>C181113659
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1327368
1327441
+
Gln
TTG
-
¡û
>C181114117
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
639309
639236
-
Gln
TTG
-
¡û
>C181123512
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
321141
321213
+
Gln
TTG
-
¡û
>C181123539
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
492710
492783
+
Gln
TTG
-
¡û
>C181186073
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1639989
1639913
-
Gln
TTG
-
¡û
>C181194817
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1776953
1776877
-
Gln
TTG
-
¡û
>C181227427
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
473468
473541
+
Gln
TTG
-
¡û
>C181227483
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
491340
491413
+
Gln
TTG
-
¡û
>C181227546
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
484823
484896
+
Gln
TTG
-
¡û
>C181227607
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
494877
494950
+
Gln
TTG
-
¡û
>C181227668
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
473831
473904
+
Gln
TTG
-
¡û
>C191004189
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1688514
1688438
-
Gln
TTG
-
¡û
>C191035499
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
429187
429260
+
Gln
TTG
-
¡û
>C191035529
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
1596396
1596323
-
Gln
TTG
-
¡û
>C191040497
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
1760633
1760709
+
Gln
TTG
-
¡û
>C191092635
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
835914
835987
+
Gln
TTG
-
¡û
>C191092698
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
521595
521668
+
Gln
TTG
-
¡û
>C191092791
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
204333
204405
+
Gln
TTG
-
¡û
>C191092818
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
371739
371812
+
Gln
TTG
-
¡û
>C191092847
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
1523058
1522985
-
Gln
TTG
-
¡û
>C191093029
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1325127
1325054
-
Gln
TTG
-
¡û
>W09127630
ACLD01000109
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
305
378
+
Gln
TTG
[ENA]
¡û
>W141818859
JQLU01000005
Bacillota
Carnobacterium gallinarum DSM 4847 [JQLU]
75396
75323
-
Gln
TTG
[ENA]
¡û
>W1910180958
BJLN01000019
Bacillota
Latilactobacillus sakei NBRC 3541 [BJLN]
26093
26020
-
Gln
TTG
[ENA]
¡û
>W1910184436
BJOQ01000006
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
55851
55927
+
Gln
TTG
[ENA]
¡û
>W1910184440
BJOQ01000015
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
55062
54989
-
Gln
TTG
[ENA]
¡û
>W1910184458
BJOQ01000075
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
398
325
-
Gln
TTG
[ENA]
¡û
>W1910471972
FXDK01000039
Bacillota
Latilactobacillus curvatus [FXDK]
76070
76146
+
Gln
TTG
[ENA]
¡û
>W1910751909
MKDL01000043
Bacillota
Latilactobacillus sakei RI-493 [MKDL]
25501
25428
-
Gln
TTG
[ENA]
¡û
>W1910751949
MKDM01000022
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
4139
4066
-
Gln
TTG
[ENA]
¡û
>W1910751983
MKDN01000033
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
1210
1283
+
Gln
TTG
[ENA]
¡û
>W1910752015
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
26126
26053
-
Gln
TTG
[ENA]
¡û
>W1910753033
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
1507
1580
+
Gln
TTG
[ENA]
¡û
>W1910753062
MKGH01000042
Bacillota
Latilactobacillus sakei RI-517 [MKGH]
25140
25067
-
Gln
TTG
[ENA]
¡û
>W1911217874
NRQG01000020
Bacillota
Carnobacterium maltaromaticum A3 [NRQG]
66829
66756
-
Gln
TTG
[ENA]
¡û
>W1911217984
NRQI01000020
Bacillota
Carnobacterium maltaromaticum A1 [NRQI]
66829
66756
-
Gln
TTG
[ENA]
¡û
>W1911493399
OBHJ01000025
Bacillota
Latilactobacillus sakei J18 [OBHJ]
402
475
+
Gln
TTG
[ENA]
¡û
>W1911493444
OBHK01000032
Bacillota
Latilactobacillus sakei J160x1 [OBHK]
402
475
+
Gln
TTG
[ENA]
¡û
>W1911493465
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
1586
1659
+
Gln
TTG
[ENA]
¡û
>W1911493549
OBHN01000002
Bacillota
Latilactobacillus sakei J112 [OBHN]
402
475
+
Gln
TTG
[ENA]
¡û
>W1911533913
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
26220
26147
-
Gln
TTG
[ENA]
¡û
>W1911551517
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
1615
1688
+
Gln
TTG
[ENA]
¡û
>W1911631449
PUFE01000016
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
27854
27781
-
Gln
TTG
[ENA]
¡û
>W1911706074
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
26074
26001
-
Gln
TTG
[ENA]
¡û
>WENV11100313
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
1488
1561
+
Gln
TTG
[ENA]
¡û
>W1511344714
JRFY01000045
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
404
477
+
Gln
TTG
[ENA]
¡û
>W1511402275
JTJV01000009
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
41889
41965
+
Gln
TTG
[ENA]
¡û
>C161093425
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
342562
342638
+
Gln
TTG
-
¡û
>W121008293
AGBU01000001
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
98576
98500
-
Gln
TTG
[ENA]
¡û
>W121008314
AGBU01000073
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
2915
2988
+
Gln
TTG
[ENA]
¡û
>W121008330
AGBU01000098
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
1493
1566
+
Gln
TTG
[ENA]
¡û
>W1610034169
AZDN01000015
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
26077
26004
-
Gln
TTG
[ENA]
¡û
>W1610036418
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
1528
1601
+
Gln
TTG
[ENA]
¡û
>W1610045559
BBBQ01000007
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
55929
56005
+
Gln
TTG
[ENA]
¡û
>W1610909582
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1587
1660
+
Gln
TTG
[ENA]
¡û
>W1710031296
AZDN01000015
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
26077
26004
-
Gln
TTG
[ENA]
¡û
>W1710033457
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
1528
1601
+
Gln
TTG
[ENA]
¡û
>W1710042400
BBBQ01000007
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
55929
56005
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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