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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403707 (41 seq.)
>W1711414433
MGZL01000119
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
144776
144850
+
Glu
TTC
[ENA]
¡û
>W1711414438
MGZL01000124
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
81025
81099
+
Glu
TTC
[ENA]
¡û
>W131228716
AUGE01000003
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
121790
121716
-
Glu
TTC
[ENA]
¡û
>W131228720
AUGE01000005
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
85537
85463
-
Glu
TTC
[ENA]
¡û
>C009998
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
1471390
1471464
+
Glu
TTC
[Ensembl]
¡û
>C010120
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
2036745
2036671
-
Glu
TTC
[Ensembl]
¡û
>C010264
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2597160
2597086
-
Glu
TTC
[Ensembl]
¡û
>w024776
AAZA01000002
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
219606
219530
-
Glu
TTC
[ENA]
¡û
>w018108
AASH01000043
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
1173
1247
+
Glu
TTC
[ENA]
¡û
>WENV180254002
OBEQ010593084
[OBEQ] groundwater metagenome; groundwater
368
294
-
Glu
TTC
[ENA]
¢þ
>WENV180256815
OBEQ010855793
[OBEQ] groundwater metagenome; groundwater
116
42
-
Glu
TTC
[ENA]
¢þ
>WENV180269822
OBEQ012102211
[OBEQ] groundwater metagenome; groundwater
297
371
+
Glu
TTC
[ENA]
¢þ
>W08010648
ABRF01000008
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
60090
60164
+
Glu
TTC
[ENA]
¡û
>W08010662
ABRF01000015
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
3074
3148
+
Glu
TTC
[ENA]
¡û
>WENV181231198
OFEK01013334
[OFEK] activated sludge metagenome; Anaerobic digester
1312
1238
-
Glu
TTC
[ENA]
¢þ
>WENV181286643
OFGW01015909
[OFGW] soil metagenome; Clay
366
292
-
Glu
TTC
[ENA]
¢þ
>WENV181297140
OFHK01011730
[OFHK] soil metagenome; Clay
1148
1222
+
Glu
TTC
[ENA]
¢þ
>C08005212
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
3569795
3569724
-
Glu
TTC
[Ensembl]
¡û
>C08005225
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
664210
664139
-
Glu
TTC
[Ensembl]
¡û
>C191000629
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1996864
1996790
-
Glu
TTC
-
¡û
>W09100208
AAAS03000002
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
634471
634397
-
Glu
TTC
[ENA]
¡û
>W09105082
AAON01000058
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
9393
9319
-
Glu
TTC
[ENA]
¡û
>W09133603
ACPJ01000001
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
73428
73502
+
Glu
TTC
[ENA]
¡û
>W09133627
ACPJ01000027
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
40120
40046
-
Glu
TTC
[ENA]
¡û
>C09106376
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
3283314
3283240
-
Glu
TTC
[Ensembl]
¡û
>C09106396
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
1369212
1369286
+
Glu
TTC
[Ensembl]
¡û
>C09106438
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
689097
689023
-
Glu
TTC
[Ensembl]
¡û
>W1810486164
QAXR01000005
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
125244
125170
-
Glu
TTC
[ENA]
¡û
>C151059723
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
1397721
1397795
+
Glu
TTC
[Ensembl]
¡û
>W1510006449
BAZF01000016
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
84911
84837
-
Glu
TTC
[ENA]
¡û
>C10107462
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
2008086
2008012
-
Glu
TTC
[Ensembl]
¡û
>C11109576
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
4450937
4451011
+
Glu
TTC
[Ensembl]
¡û
>C11109587
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
3619758
3619684
-
Glu
TTC
[Ensembl]
¡û
>W1511500981
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1221779
1221853
+
Glu
TTC
[ENA]
¡û
>C161025474
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
31266
31192
-
Glu
TTC
[Ensembl]
¡û
>C161080231
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
1672088
1672162
+
Glu
TTC
-
¡û
>W121010723
AGJM01000004
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
121
47
-
Glu
TTC
[ENA]
¡û
>W1610046431
BBCJ01000008
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
22053
21979
-
Glu
TTC
[ENA]
¡û
>W1710043227
BBCJ01000008
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
22053
21979
-
Glu
TTC
[ENA]
¡û
>W1710087164
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
2852933
2853007
+
Glu
TTC
[ENA]
¡û
>W1710087181
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
2173527
2173453
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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