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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403723 (126 seq.)
>W131000357
AGEB01000008
Spirochaetota
Treponema denticola US-Trep [AGEB]
134984
135057
+
Glu
TTC
[ENA]
¡û
>W131003030
AHAB01000002
Spirochaetota
Treponema denticola SP23 [AHAB]
301378
301451
+
Glu
TTC
[ENA]
¡û
>W131003098
AHAC01000021
Spirochaetota
Treponema denticola SP32 [AHAC]
242818
242745
-
Glu
TTC
[ENA]
¡û
>W131003144
AHAD01000009
Spirochaetota
Treponema denticola SP44 [AHAD]
393111
393184
+
Glu
TTC
[ENA]
¡û
>W1711137379
LVBI01000024
Spirochaetota
Spirochaetales bacterium Spiro_07 [LVBI]
15028
14955
-
Glu
TTC
[ENA]
¡û
>W1711137404
LVBJ01000013
Spirochaetota
Spirochaetales bacterium Spiro_08 [LVBJ]
65515
65590
+
Glu
TTC
[ENA]
¡û
>W1711137445
LVBK01000008
Spirochaetota
Spirochaetales bacterium Spiro_09 [LVBK]
23143
23214
+
Glu
TTC
[ENA]
¡û
>W1711137485
LVBL01000008
Spirochaetota
Spirochaetales bacterium Spiro_10 [LVBL]
32300
32226
-
Glu
TTC
[ENA]
¡û
>W131205813
ATFC01000009
Spirochaetota
Treponema vincentii F0403 [ATFC]
197147
197072
-
Glu
TTC
[ENA]
¡û
>W131205890
ATFE01000006
Spirochaetota
Treponema medium ATCC 700293 [ATFE]
2332
2258
-
Glu
TTC
[ENA]
¡û
>W131205952
ATFF01000006
Spirochaetota
Treponema maltophilum ATCC 51939 [ATFF]
779011
778936
-
Glu
TTC
[ENA]
¡û
>W1711524558
MLPZ01000013
Spirochaetota
Treponema sp. CETP13 [MLPZ]
64776
64703
-
Glu
TTC
[ENA]
¡û
>C025470
AE017226
Spirochaetota
Treponema denticola ATCC 35405 [AE017226]
1551533
1551604
+
Glu
TTC
[Ensembl]
¡û
>WENV180001230
FLNX01000538
[FLNX] bioreactor metagenome; Moose rumen
7922
7849
-
Glu
TTC
[ENA]
¢þ
>W141005318
AGDQ01000002
Spirochaetota
Treponema denticola AL-2 [AGDQ]
186749
186676
-
Glu
TTC
[ENA]
¡û
>W141005388
AGDR01000038
Spirochaetota
Treponema denticola ASLM [AGDR]
135040
135113
+
Glu
TTC
[ENA]
¡û
>W141005433
AGDS01000016
Spirochaetota
Treponema denticola ATCC 33520 [AGDS]
32909
32836
-
Glu
TTC
[ENA]
¡û
>W141005478
AGDT01000020
Spirochaetota
Treponema denticola ATCC 33521 [AGDT]
18943
18870
-
Glu
TTC
[ENA]
¡û
>W141005485
AGDU01000001
Spirochaetota
Treponema denticola ATCC 35404 [AGDU]
326780
326853
+
Glu
TTC
[ENA]
¡û
>W141005528
AGDV01000001
Spirochaetota
Treponema denticola H-22 [AGDV]
336735
336808
+
Glu
TTC
[ENA]
¡û
>W141005606
AGDW01000022
Spirochaetota
Treponema denticola H1-T [AGDW]
60380
60307
-
Glu
TTC
[ENA]
¡û
>W141005647
AGDX01000013
Spirochaetota
Treponema denticola MYR-T [AGDX]
52762
52689
-
Glu
TTC
[ENA]
¡û
>W141005696
AGDY01000011
Spirochaetota
Treponema denticola OTK [AGDY]
74537
74610
+
Glu
TTC
[ENA]
¡û
>W141005729
AGDZ01000028
Spirochaetota
Treponema denticola SP33 [AGDZ]
262615
262688
+
Glu
TTC
[ENA]
¡û
>W141005771
AGEA01000017
Spirochaetota
Treponema denticola SP37 [AGEA]
69749
69822
+
Glu
TTC
[ENA]
¡û
>WENV180548401
OCIW01013169
[OCIW] human oral metagenome; human oral
92
166
+
Glu
TTC
[ENA]
¢þ
>W141055885
AOTM01000021
Spirochaetota
Treponema pedis str. T M1 [AOTM]
24693
24765
+
Glu
TTC
[ENA]
¡û
>W141055930
AOTN01000073
Spirochaetota
Treponema pedis str. B 683 [AOTN]
1625
1697
+
Glu
TTC
[ENA]
¡û
>W141055997
AOTO01000602
Spirochaetota
Treponema pedis isoM1111 [AOTO]
1583
1511
-
Glu
TTC
[ENA]
¡û
>W141056016
AOTP01000044
Spirochaetota
Treponema pedis isoE1186 [AOTP]
34270
34198
-
Glu
TTC
[ENA]
¡û
>W141056062
AOTQ01000062
Spirochaetota
Treponema pedis isoM1220 [AOTQ]
8057
8129
+
Glu
TTC
[ENA]
¡û
>W141056102
AOTR01000001
Spirochaetota
Treponema pedis isoM1224 [AOTR]
12161
12233
+
Glu
TTC
[ENA]
¡û
>W141064684
AQCF01000033
Spirochaetota
Treponema phagedenis 4A [AQCF]
26358
26285
-
Glu
TTC
[ENA]
¡û
>WENV180708648
ODFJ01004188
[ODFJ] human metagenome; G_DNA_Tongue dorsum
5442
5369
-
Glu
TTC
[ENA]
¢þ
>WENV180721987
ODGL01044589
[ODGL] human metagenome; G_DNA_Subgingival plaque
310
383
+
Glu
TTC
[ENA]
¢þ
>WENV180723007
ODGM01118480
[ODGM] human metagenome; G_DNA_Palatine Tonsils
199
126
-
Glu
TTC
[ENA]
¢þ
>WENV180727323
ODGU01004294
[ODGU] human metagenome; G_DNA_Supragingival plaque
3299
3372
+
Glu
TTC
[ENA]
¢þ
>WENV180727713
ODGU01010538
[ODGU] human metagenome; G_DNA_Supragingival plaque
2100
2027
-
Glu
TTC
[ENA]
¢þ
>WENV180727722
ODGU01010701
[ODGU] human metagenome; G_DNA_Supragingival plaque
1951
1877
-
Glu
TTC
[ENA]
¢þ
>WENV180727726
ODGU01010783
[ODGU] human metagenome; G_DNA_Supragingival plaque
1926
2000
+
Glu
TTC
[ENA]
¢þ
>WENV180731842
ODGW01020891
[ODGW] human metagenome; G_DNA_Supragingival plaque
547
621
+
Glu
TTC
[ENA]
¢þ
>WENV180734813
ODGZ01025981
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1189
1262
+
Glu
TTC
[ENA]
¢þ
>WENV180750044
ODHS01000303
[ODHS] human metagenome; G_DNA_Supragingival plaque
2062
1989
-
Glu
TTC
[ENA]
¢þ
>WENV180750932
ODHS01013213
[ODHS] human metagenome; G_DNA_Supragingival plaque
1456
1527
+
Glu
TTC
[ENA]
¢þ
>WENV180780348
ODIN01142074
[ODIN] human metagenome; G_DNA_Throat
101
27
-
Glu
TTC
[ENA]
¢þ
>WENV180787770
ODIS01014571
[ODIS] human metagenome; G_DNA_Supragingival plaque
1346
1419
+
Glu
TTC
[ENA]
¢þ
>WENV180788213
ODIS01039371
[ODIS] human metagenome; G_DNA_Supragingival plaque
3
77
+
Glu
TTC
[ENA]
¢þ
>WENV180796443
ODJB01004853
[ODJB] human metagenome; G_DNA_Supragingival plaque
2623
2697
+
Glu
TTC
[ENA]
¢þ
>WENV180805254
ODJG01119452
[ODJG] human metagenome; G_DNA_Supragingival plaque
119
46
-
Glu
TTC
[ENA]
¢þ
>WENV180809521
ODJK01022599
[ODJK] human metagenome; G_DNA_Subgingival plaque
889
816
-
Glu
TTC
[ENA]
¢þ
>WENV180843753
ODKN01010501
[ODKN] human metagenome; G_DNA_Supragingival plaque
74
1
-
Glu
TTC
[ENA]
¢þ
>WENV180846145
ODKT01006006
[ODKT] human metagenome; G_DNA_Supragingival plaque
3495
3569
+
Glu
TTC
[ENA]
¢þ
>WENV180883781
ODMC01015480
[ODMC] human metagenome; G_DNA_Tongue dorsum
158
231
+
Glu
TTC
[ENA]
¢þ
>WENV180924960
ODTK01027379
[ODTK] human metagenome; G_DNA_Supragingival plaque
384
457
+
Glu
TTC
[ENA]
¢þ
>WENV180930929
ODTP01000750
[ODTP] human metagenome; G_DNA_Tongue dorsum
22123
22196
+
Glu
TTC
[ENA]
¢þ
>WENV180938097
ODTX01000599
[ODTX] human metagenome; G_DNA_Supragingival plaque
2062
1989
-
Glu
TTC
[ENA]
¢þ
>WENV180939858
ODTX01107314
[ODTX] human metagenome; G_DNA_Supragingival plaque
74
1
-
Glu
TTC
[ENA]
¢þ
>WENV180944355
ODUC01014912
[ODUC] human metagenome; G_DNA_Supragingival plaque
74
1
-
Glu
TTC
[ENA]
¢þ
>WENV180950276
ODUG01147221
[ODUG] human metagenome; G_DNA_Tongue dorsum
152
225
+
Glu
TTC
[ENA]
¢þ
>WENV180950818
ODUH01002316
[ODUH] human metagenome; G_DNA_Subgingival plaque
2096
2023
-
Glu
TTC
[ENA]
¢þ
>WENV180951446
ODUH01024499
[ODUH] human metagenome; G_DNA_Subgingival plaque
866
792
-
Glu
TTC
[ENA]
¢þ
>WENV180951519
ODUH01028797
[ODUH] human metagenome; G_DNA_Subgingival plaque
2
76
+
Glu
TTC
[ENA]
¢þ
>WENV180951709
ODUH01044407
[ODUH] human metagenome; G_DNA_Subgingival plaque
883
810
-
Glu
TTC
[ENA]
¢þ
>WENV180976365
ODUY01088346
[ODUY] human metagenome; G_DNA_Supragingival plaque
123
196
+
Glu
TTC
[ENA]
¢þ
>WENV180980280
ODVE01000018
[ODVE] human metagenome; G_DNA_Supragingival plaque
32866
32793
-
Glu
TTC
[ENA]
¢þ
>WENV180980653
ODVE01000949
[ODVE] human metagenome; G_DNA_Supragingival plaque
9969
10043
+
Glu
TTC
[ENA]
¢þ
>WENV180980664
ODVE01000984
[ODVE] human metagenome; G_DNA_Supragingival plaque
3041
2968
-
Glu
TTC
[ENA]
¢þ
>WENV180981051
ODVE01005823
[ODVE] human metagenome; G_DNA_Supragingival plaque
2054
1981
-
Glu
TTC
[ENA]
¢þ
>WENV181008891
ODWE01018331
[ODWE] human metagenome; G_DNA_Supragingival plaque
335
261
-
Glu
TTC
[ENA]
¢þ
>WENV181038579
ODXQ01002355
[ODXQ] human metagenome; G_DNA_Tongue dorsum
8362
8435
+
Glu
TTC
[ENA]
¢þ
>WENV181045029
ODXV01111533
[ODXV] human metagenome; G_DNA_Tongue dorsum
151
78
-
Glu
TTC
[ENA]
¢þ
>WENV181050233
ODYD01009523
[ODYD] human metagenome; G_DNA_Supragingival plaque
2459
2532
+
Glu
TTC
[ENA]
¢þ
>WENV181064975
ODYP01187424
[ODYP] human metagenome; G_DNA_Supragingival plaque
25
98
+
Glu
TTC
[ENA]
¢þ
>WENV181067582
ODZI01027727
[ODZI] human metagenome; G_DNA_Supragingival plaque
82
9
-
Glu
TTC
[ENA]
¢þ
>WENV181074194
OEAO01004421
[OEAO] human metagenome; G_DNA_Tongue dorsum
6207
6134
-
Glu
TTC
[ENA]
¢þ
>WENV181075704
OEAP01000172
[OEAP] human metagenome; G_DNA_Supragingival plaque
23483
23556
+
Glu
TTC
[ENA]
¢þ
>WENV181076031
OEAP01001384
[OEAP] human metagenome; G_DNA_Supragingival plaque
2059
1986
-
Glu
TTC
[ENA]
¢þ
>WENV181078748
OEAS01000443
[OEAS] human metagenome; G_DNA_Supragingival plaque
25072
25146
+
Glu
TTC
[ENA]
¢þ
>WENV181079006
OEAS01001352
[OEAS] human metagenome; G_DNA_Supragingival plaque
12255
12329
+
Glu
TTC
[ENA]
¢þ
>WENV181079078
OEAS01001761
[OEAS] human metagenome; G_DNA_Supragingival plaque
10321
10395
+
Glu
TTC
[ENA]
¢þ
>WENV181079884
OEAS01018454
[OEAS] human metagenome; G_DNA_Supragingival plaque
1914
1987
+
Glu
TTC
[ENA]
¢þ
>WENV181080009
OEAS01022769
[OEAS] human metagenome; G_DNA_Supragingival plaque
2501
2574
+
Glu
TTC
[ENA]
¢þ
>WENV181082067
OEAS01560532
[OEAS] human metagenome; G_DNA_Supragingival plaque
74
1
-
Glu
TTC
[ENA]
¢þ
>WENV181087541
OEAY01060177
[OEAY] human metagenome; G_DNA_Tongue dorsum
3
76
+
Glu
TTC
[ENA]
¢þ
>WENV181090963
OEBC01007329
[OEBC] human metagenome; G_DNA_Supragingival plaque
2040
1967
-
Glu
TTC
[ENA]
¢þ
>WENV181095132
OEBY01003372
[OEBY] human metagenome; G_DNA_Tongue dorsum
5864
5937
+
Glu
TTC
[ENA]
¢þ
>WENV181103306
OECT01066182
[OECT] human metagenome; G_DNA_Tongue dorsum
65
138
+
Glu
TTC
[ENA]
¢þ
>WENV181105741
OEED01013773
[OEED] human metagenome; G_DNA_Tongue dorsum
167
240
+
Glu
TTC
[ENA]
¢þ
>WENV181125442
OEFT01113162
[OEFT] human metagenome; G_DNA_Tongue dorsum
93
20
-
Glu
TTC
[ENA]
¢þ
>WENV181138897
OEGN01001369
[OEGN] human metagenome; G_DNA_Tongue dorsum
11287
11360
+
Glu
TTC
[ENA]
¢þ
>WENV181151717
OEHW01106260
[OEHW] human metagenome; G_DNA_Tongue dorsum
237
164
-
Glu
TTC
[ENA]
¢þ
>WENV181152683
OEIA01003998
[OEIA] human metagenome; G_DNA_Supragingival plaque
2598
2672
+
Glu
TTC
[ENA]
¢þ
>WENV181178877
OEJT01000457
[OEJT] human metagenome; G_DNA_Supragingival plaque
2062
1989
-
Glu
TTC
[ENA]
¢þ
>WENV181179232
OEJT01002158
[OEJT] human metagenome; G_DNA_Supragingival plaque
2116
2043
-
Glu
TTC
[ENA]
¢þ
>WENV181182593
OEJV01020352
[OEJV] human metagenome; G_DNA_Supragingival plaque
328
254
-
Glu
TTC
[ENA]
¢þ
>WENV181208059
OFBA01013702
[OFBA] metagenome; hydrothermal vent
4
78
+
Glu
TTC
[ENA]
¢þ
>W141146165
AWVH01000002
Spirochaetota
Treponema lecithinolyticum ATCC 700332 [AWVH]
44539
44466
-
Glu
TTC
[ENA]
¡û
>WENV183509641
OMHJ01002236
[OMHJ] human oral metagenome; human oral
1227
1153
-
Glu
TTC
[ENA]
¢þ
>WENV183704851
PDWI01000685
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7830
7903
+
Glu
TTC
[ENA]
¢þ
>WENV183718577
PDWJ01005117
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5592
5665
+
Glu
TTC
[ENA]
¢þ
>WENV183719533
PDWJ01015751
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4484
4555
+
Glu
TTC
[ENA]
¢þ
>WENV170112428
CEGE01007834
[CEGE] microbial mat metagenome; grass silage
1265
1193
-
Glu
TTC
[ENA]
¢þ
>WENV170635180
JDSF01000191
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
4142
4214
+
Glu
TTC
[ENA]
¢þ
>WENV170641315
JFJP01036772
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
20
94
+
Glu
TTC
[ENA]
¢þ
>WENV170654954
JTFN01000086
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
34863
34936
+
Glu
TTC
[ENA]
¢þ
>WENV170655507
JTFN01039635
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
423
351
-
Glu
TTC
[ENA]
¢þ
>WENV170656250
JTFO01006692
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
643
571
-
Glu
TTC
[ENA]
¢þ
>WENV170656270
JTFO01007583
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1594
1667
+
Glu
TTC
[ENA]
¢þ
>WENV170689365
LFRM01291031
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
392
318
-
Glu
TTC
[ENA]
¢þ
>WENV170722765
LSQX01242341
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2454
2380
-
Glu
TTC
[ENA]
¢þ
>WENV170779145
LZCG01001707
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
720
792
+
Glu
TTC
[ENA]
¢þ
>C141003671
CP004120
Spirochaetota
Treponema pedis str. T A4 [CP004120]
2399965
2400037
+
Glu
TTC
[Ensembl]
¡û
>W1810893579
QUWK01000012
Spirochaetota
Sphaerochaeta halotolerans 4·î11Æü [QUWK]
91457
91385
-
Glu
TTC
[ENA]
¡û
>C151046008
CP009227
Spirochaetota
Treponema sp. OMZ 838 [CP009227]
1290379
1290306
-
Glu
TTC
[Ensembl]
¡û
>C151046044
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
2430684
2430611
-
Glu
TTC
[Ensembl]
¡û
>W10106166
ACYH01000038
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
1907
1832
-
Glu
TTC
[ENA]
¡û
>W1510074556
CDNC01000023
Spirochaetota
Treponema phagedenis V1 [CDNC]
138222
138149
-
Glu
TTC
[ENA]
¡û
>W11108489
ACYH01000038
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
1907
1832
-
Glu
TTC
[ENA]
¡û
>W11115141
ADEC01000014
Spirochaetota
Treponema denticola F0402 [ADEC]
334135
334208
+
Glu
TTC
[ENA]
¡û
>C11121328
CP002541
Spirochaetota
Sphaerochaeta globosa str. Buddy [CP002541]
1345609
1345536
-
Glu
TTC
[Ensembl]
¡û
>C11122435
CP002696
Spirochaetota
Treponema brennaborense DSM 12168 [CP002696]
2159591
2159516
-
Glu
TTC
[Ensembl]
¡û
>W11135652
AEFH01000086
Spirochaetota
Treponema phagedenis F0421 [AEFH]
23725
23798
+
Glu
TTC
[ENA]
¡û
>W1610948499
LVBI01000024
Spirochaetota
Spirochaetales bacterium Spiro_07 [LVBI]
15028
14955
-
Glu
TTC
[ENA]
¡û
>W1610948524
LVBJ01000013
Spirochaetota
Spirochaetales bacterium Spiro_08 [LVBJ]
65515
65590
+
Glu
TTC
[ENA]
¡û
>W1610948565
LVBK01000008
Spirochaetota
Spirochaetales bacterium Spiro_09 [LVBK]
23143
23214
+
Glu
TTC
[ENA]
¡û
>W1610948605
LVBL01000008
Spirochaetota
Spirochaetales bacterium Spiro_10 [LVBL]
32300
32226
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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