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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403756 (40 seq.)
>WENV182629195
OJKR01028182
[OJKR] metagenome; surface
217
144
-
Gln
TTG
[ENA]
¢þ
>WENV183167078
OLOY01030293
[OLOY] human gut metagenome; faeces
24
97
+
Gln
TTG
[ENA]
¢þ
>W1911495487
OBMW01000031
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
30977
30904
-
Gln
TTG
[ENA]
¡û
>W1911495508
OBMW01000047
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
13
86
+
Gln
TTG
[ENA]
¡û
>W1911540017
ONZM01000025
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
22
95
+
Gln
TTG
[ENA]
¡û
>W1911540020
ONZM01000028
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
22
95
+
Gln
TTG
[ENA]
¡û
>W1911541754
OOIO01000015
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
22
95
+
Gln
TTG
[ENA]
¡û
>W1911541763
OOIO01000019
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
22
95
+
Gln
TTG
[ENA]
¡û
>W1911631759
PUFI01000005
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
219991
220064
+
Gln
TTG
[ENA]
¡û
>W1911631786
PUFI01000009
Bacillota
Leuconostoc fallax ATCC 700006 [PUFI]
18688
18761
+
Gln
TTG
[ENA]
¡û
>WENV11100358
AEKF01000126
Food metagenome, Jonggazip commercial cabbage kimchi
2325
2398
+
Gln
TTG
[ENA]
¡û
>C11112796
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
253387
253460
+
Gln
TTG
[Ensembl]
¡û
>C11112842
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1720822
1720749
-
Gln
TTG
[Ensembl]
¡û
>W11138656
AEIZ01000013
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
67212
67139
-
Gln
TTG
[ENA]
¡û
>W11138680
AEIZ01000026
Bacillota
Leuconostoc fallax KCTC 3537 [AEIZ]
250429
250356
-
Gln
TTG
[ENA]
¡û
>W11140928
AEMI01000015
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
97733
97660
-
Gln
TTG
[ENA]
¡û
>W11140960
AEMI01000039
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
51464
51537
+
Gln
TTG
[ENA]
¡û
>W11140978
AEMJ01000355
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
78
5
-
Gln
TTG
[ENA]
¡û
>W11141005
AEMJ01000823
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
110
37
-
Gln
TTG
[ENA]
¡û
>W11184727
BACM01000989
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
76
3
-
Gln
TTG
[ENA]
¡û
>C161107369
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
257536
257609
+
Gln
TTG
[Ensembl]
¡û
>C161107415
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1761158
1761085
-
Gln
TTG
[Ensembl]
¡û
>W1610187650
FBSX01000002
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
30946
30873
-
Gln
TTG
[ENA]
¡û
>W1610187672
FBSX01000025
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
292237
292164
-
Gln
TTG
[ENA]
¡û
>W1610187723
FBSY01000017
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
315516
315443
-
Gln
TTG
[ENA]
¡û
>W1610187747
FBTB01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
73518
73591
+
Gln
TTG
[ENA]
¡û
>W1610187804
FBTC01000020
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
78
5
-
Gln
TTG
[ENA]
¡û
>W1610187821
FBTD01000003
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
259283
259210
-
Gln
TTG
[ENA]
¡û
>W1610187885
FBTU01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
52646
52719
+
Gln
TTG
[ENA]
¡û
>C131007791
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
232007
232080
+
Gln
TTG
[Ensembl]
¡û
>C131007837
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1684476
1684403
-
Gln
TTG
[Ensembl]
¡û
>C131008286
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
112081
112154
+
Gln
TTG
[Ensembl]
¡û
>C131008304
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
217267
217340
+
Gln
TTG
[Ensembl]
¡û
>W1710189266
FBSX01000002
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
30946
30873
-
Gln
TTG
[ENA]
¡û
>W1710189288
FBSX01000025
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
292237
292164
-
Gln
TTG
[ENA]
¡û
>W1710189339
FBSY01000017
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
315516
315443
-
Gln
TTG
[ENA]
¡û
>W1710189363
FBTB01000003
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
73518
73591
+
Gln
TTG
[ENA]
¡û
>W1710189420
FBTC01000020
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
78
5
-
Gln
TTG
[ENA]
¡û
>W1710189437
FBTD01000003
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
259283
259210
-
Gln
TTG
[ENA]
¡û
>W1710189501
FBTU01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
52646
52719
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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